Protein–RNA interactions for Protein: Q6PIV2

FOXR1, Forkhead box protein R1, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1Q6PIV2 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
FOXR1Q6PIV2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXR1Q6PIV2 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXR1Q6PIV2 AC006128.1-201ENST00000624704 1661 ntBASIC21.15■□□□□ 0.98
FOXR1Q6PIV2 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXR1Q6PIV2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXR1Q6PIV2 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.14■□□□□ 0.98
FOXR1Q6PIV2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
FOXR1Q6PIV2 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXR1Q6PIV2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
FOXR1Q6PIV2 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 AC080038.1-201ENST00000611274 1154 ntBASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXR1Q6PIV2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXR1Q6PIV2 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXR1Q6PIV2 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 PLK5-205ENST00000642079 1969 ntBASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXR1Q6PIV2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms