Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDH1Q08174 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PCDH1Q08174 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDH1Q08174 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDH1Q08174 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.65■□□□□ 0.74
PCDH1Q08174 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDH1Q08174 AC011767.1-201ENST00000617410 1153 ntBASIC19.65■□□□□ 0.74
PCDH1Q08174 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 AC068338.2-201ENST00000563278 1430 ntBASIC19.65■□□□□ 0.74
PCDH1Q08174 AC087633.2-202ENST00000565166 1439 ntBASIC19.65■□□□□ 0.74
PCDH1Q08174 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDH1Q08174 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
PCDH1Q08174 AC092667.1-201ENST00000434301 2586 ntBASIC19.65■□□□□ 0.74
PCDH1Q08174 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.65■□□□□ 0.74
PCDH1Q08174 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH1Q08174 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH1Q08174 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PCDH1Q08174 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 PGM5P4-201ENST00000421970 445 ntBASIC19.64■□□□□ 0.73
PCDH1Q08174 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDH1Q08174 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
PCDH1Q08174 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDH1Q08174 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
PCDH1Q08174 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDH1Q08174 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
PCDH1Q08174 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDH1Q08174 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.63■□□□□ 0.73
PCDH1Q08174 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.63■□□□□ 0.73
PCDH1Q08174 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDH1Q08174 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PCDH1Q08174 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.63■□□□□ 0.73
PCDH1Q08174 AC022517.1-201ENST00000592429 346 ntBASIC19.63■□□□□ 0.73
PCDH1Q08174 AC016405.3-201ENST00000607710 860 ntBASIC19.63■□□□□ 0.73
PCDH1Q08174 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.63■□□□□ 0.73
PCDH1Q08174 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.63■□□□□ 0.73
PCDH1Q08174 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PCDH1Q08174 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDH1Q08174 CYP21A1P-202ENST00000354927 1481 ntBASIC19.62■□□□□ 0.73
PCDH1Q08174 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.62■□□□□ 0.73
PCDH1Q08174 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PCDH1Q08174 RARRES2P4-201ENST00000514074 484 ntBASIC19.62■□□□□ 0.73
PCDH1Q08174 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.62■□□□□ 0.73
PCDH1Q08174 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.62■□□□□ 0.73
PCDH1Q08174 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
PCDH1Q08174 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PCDH1Q08174 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
PCDH1Q08174 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PCDH1Q08174 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
PCDH1Q08174 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
PCDH1Q08174 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PCDH1Q08174 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.62■□□□□ 0.73
PCDH1Q08174 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PCDH1Q08174 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
PCDH1Q08174 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
PCDH1Q08174 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.61■□□□□ 0.73
PCDH1Q08174 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.61■□□□□ 0.73
PCDH1Q08174 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
PCDH1Q08174 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.61■□□□□ 0.73
PCDH1Q08174 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.61■□□□□ 0.73
PCDH1Q08174 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
PCDH1Q08174 BID-214ENST00000617586 542 ntTSL 5 BASIC19.61■□□□□ 0.73
PCDH1Q08174 AC231657.2-201ENST00000624556 255 ntBASIC19.61■□□□□ 0.73
PCDH1Q08174 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.61■□□□□ 0.73
PCDH1Q08174 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
PCDH1Q08174 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDH1Q08174 AL512408.1-201ENST00000569378 2000 ntBASIC19.61■□□□□ 0.73
PCDH1Q08174 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDH1Q08174 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
PCDH1Q08174 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PCDH1Q08174 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDH1Q08174 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms