Protein–RNA interactions for Protein: P09326

CD48, CD48 antigen, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD48P09326 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CD48P09326 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.14■□□□□ 0.97
CD48P09326 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CD48P09326 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CD48P09326 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CD48P09326 KRT8P36-201ENST00000489121 1440 ntBASIC21.13■□□□□ 0.97
CD48P09326 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CD48P09326 SMG8-203ENST00000578922 2178 ntBASIC21.13■□□□□ 0.97
CD48P09326 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CD48P09326 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CD48P09326 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.13■□□□□ 0.97
CD48P09326 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.13■□□□□ 0.97
CD48P09326 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CD48P09326 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.13■□□□□ 0.97
CD48P09326 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.13■□□□□ 0.97
CD48P09326 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.13■□□□□ 0.97
CD48P09326 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CD48P09326 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.13■□□□□ 0.97
CD48P09326 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CD48P09326 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.13■□□□□ 0.97
CD48P09326 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.12■□□□□ 0.97
CD48P09326 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.12■□□□□ 0.97
CD48P09326 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.12■□□□□ 0.97
CD48P09326 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CD48P09326 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.12■□□□□ 0.97
CD48P09326 AC099778.1-201ENST00000568593 1911 ntBASIC21.12■□□□□ 0.97
CD48P09326 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CD48P09326 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CD48P09326 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CD48P09326 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.12■□□□□ 0.97
CD48P09326 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.12■□□□□ 0.97
CD48P09326 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.12■□□□□ 0.97
CD48P09326 FAM21FP-204ENST00000608637 956 ntBASIC21.12■□□□□ 0.97
CD48P09326 IKBKGP1-201ENST00000612193 1073 ntBASIC21.12■□□□□ 0.97
CD48P09326 AC092437.1-201ENST00000624794 1048 ntBASIC21.12■□□□□ 0.97
CD48P09326 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.12■□□□□ 0.97
CD48P09326 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CD48P09326 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CD48P09326 AC068338.2-201ENST00000563278 1430 ntBASIC21.12■□□□□ 0.97
CD48P09326 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CD48P09326 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
CD48P09326 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.11■□□□□ 0.97
CD48P09326 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
CD48P09326 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CD48P09326 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.11■□□□□ 0.97
CD48P09326 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CD48P09326 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CD48P09326 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CD48P09326 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.11■□□□□ 0.97
CD48P09326 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CD48P09326 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.11■□□□□ 0.97
CD48P09326 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CD48P09326 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.1■□□□□ 0.97
CD48P09326 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.1■□□□□ 0.97
CD48P09326 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CD48P09326 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CD48P09326 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.1■□□□□ 0.97
CD48P09326 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.1■□□□□ 0.97
CD48P09326 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CD48P09326 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CD48P09326 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.1■□□□□ 0.97
CD48P09326 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.1■□□□□ 0.97
CD48P09326 BID-214ENST00000617586 542 ntTSL 5 BASIC21.1■□□□□ 0.97
CD48P09326 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
CD48P09326 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CD48P09326 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 CYP21A1P-202ENST00000354927 1481 ntBASIC21.09■□□□□ 0.97
CD48P09326 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
CD48P09326 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.09■□□□□ 0.97
CD48P09326 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
CD48P09326 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.09■□□□□ 0.97
CD48P09326 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.09■□□□□ 0.97
CD48P09326 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.09■□□□□ 0.97
CD48P09326 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CD48P09326 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CD48P09326 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.08■□□□□ 0.97
CD48P09326 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CD48P09326 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CD48P09326 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CD48P09326 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.08■□□□□ 0.97
CD48P09326 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms