Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MTDHP1-201ENST00000605323 784 ntBASIC19.96■□□□□ 0.79
SDC3O75056 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.96■□□□□ 0.79
SDC3O75056 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC3O75056 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC3O75056 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.96■□□□□ 0.79
SDC3O75056 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.79
SDC3O75056 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.95■□□□□ 0.78
SDC3O75056 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SDC3O75056 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.95■□□□□ 0.78
SDC3O75056 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 AC239809.2-201ENST00000415381 517 ntBASIC19.95■□□□□ 0.78
SDC3O75056 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SDC3O75056 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.95■□□□□ 0.78
SDC3O75056 AC120498.8-201ENST00000614275 531 ntBASIC19.95■□□□□ 0.78
SDC3O75056 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC3O75056 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.94■□□□□ 0.78
SDC3O75056 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SDC3O75056 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.94■□□□□ 0.78
SDC3O75056 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SDC3O75056 AC005829.2-201ENST00000571422 1056 ntBASIC19.94■□□□□ 0.78
SDC3O75056 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SDC3O75056 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC3O75056 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 ECEL1P1-201ENST00000373592 1742 ntBASIC19.93■□□□□ 0.78
SDC3O75056 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SDC3O75056 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.93■□□□□ 0.78
SDC3O75056 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SDC3O75056 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC3O75056 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC3O75056 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.93■□□□□ 0.78
SDC3O75056 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.93■□□□□ 0.78
SDC3O75056 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC3O75056 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.93■□□□□ 0.78
SDC3O75056 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.93■□□□□ 0.78
SDC3O75056 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SDC3O75056 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SDC3O75056 AC124016.1-201ENST00000609552 612 ntBASIC19.93■□□□□ 0.78
SDC3O75056 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.93■□□□□ 0.78
SDC3O75056 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC3O75056 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
SDC3O75056 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC3O75056 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.92■□□□□ 0.78
SDC3O75056 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SDC3O75056 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SDC3O75056 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 AL390719.1-204ENST00000412397 1219 ntBASIC19.92■□□□□ 0.78
SDC3O75056 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.92■□□□□ 0.78
SDC3O75056 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.92■□□□□ 0.78
SDC3O75056 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.92■□□□□ 0.78
SDC3O75056 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.92■□□□□ 0.78
SDC3O75056 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms