Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 USP36-216ENST00000589424 970 ntTSL 5 BASIC27.33■■□□□ 1.97
MSH5O43196 MYC-209ENST00000641252 345 ntBASIC27.33■■□□□ 1.97
MSH5O43196 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC27.33■■□□□ 1.97
MSH5O43196 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
MSH5O43196 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC27.33■■□□□ 1.97
MSH5O43196 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC27.33■■□□□ 1.97
MSH5O43196 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
MSH5O43196 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH5O43196 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH5O43196 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC27.32■■□□□ 1.96
MSH5O43196 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH5O43196 AC007322.4-201ENST00000509611 723 ntBASIC27.32■■□□□ 1.96
MSH5O43196 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC27.32■■□□□ 1.96
MSH5O43196 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC27.32■■□□□ 1.96
MSH5O43196 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC27.32■■□□□ 1.96
MSH5O43196 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH5O43196 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC27.32■■□□□ 1.96
MSH5O43196 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
MSH5O43196 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC27.32■■□□□ 1.96
MSH5O43196 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH5O43196 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC27.31■■□□□ 1.96
MSH5O43196 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC27.31■■□□□ 1.96
MSH5O43196 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC27.31■■□□□ 1.96
MSH5O43196 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC27.31■■□□□ 1.96
MSH5O43196 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH5O43196 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 INO80E-214ENST00000620599 515 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH5O43196 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC27.31■■□□□ 1.96
MSH5O43196 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
MSH5O43196 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH5O43196 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH5O43196 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC27.31■■□□□ 1.96
MSH5O43196 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
MSH5O43196 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
MSH5O43196 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC27.3■■□□□ 1.96
MSH5O43196 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC27.3■■□□□ 1.96
MSH5O43196 AC008550.1-201ENST00000511500 884 ntBASIC27.3■■□□□ 1.96
MSH5O43196 ADAM3B-201ENST00000569937 840 ntBASIC27.3■■□□□ 1.96
MSH5O43196 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
MSH5O43196 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
MSH5O43196 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
MSH5O43196 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
MSH5O43196 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC27.29■■□□□ 1.96
MSH5O43196 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC27.29■■□□□ 1.96
MSH5O43196 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
MSH5O43196 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC27.29■■□□□ 1.96
MSH5O43196 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
MSH5O43196 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC27.29■■□□□ 1.96
MSH5O43196 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 AC091874.3-201ENST00000512672 1195 ntBASIC27.29■■□□□ 1.96
MSH5O43196 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC27.29■■□□□ 1.96
MSH5O43196 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC27.29■■□□□ 1.96
MSH5O43196 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC27.29■■□□□ 1.96
MSH5O43196 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
MSH5O43196 AC073648.6-201ENST00000641589 218 ntBASIC27.29■■□□□ 1.96
MSH5O43196 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC27.29■■□□□ 1.96
MSH5O43196 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
MSH5O43196 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC27.28■■□□□ 1.96
MSH5O43196 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
MSH5O43196 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC27.28■■□□□ 1.96
MSH5O43196 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH5O43196 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 REC114-201ENST00000331090 927 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 ISCU-212ENST00000547005 795 ntTSL 3 BASIC27.28■■□□□ 1.96
MSH5O43196 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 AC132872.1-201ENST00000566986 1195 ntBASIC27.28■■□□□ 1.96
MSH5O43196 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH5O43196 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH5O43196 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
MSH5O43196 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
MSH5O43196 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
MSH5O43196 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH5O43196 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC27.27■■□□□ 1.96
MSH5O43196 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH5O43196 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
MSH5O43196 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH5O43196 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH5O43196 RPS6P14-201ENST00000425165 719 ntBASIC27.27■■□□□ 1.96
MSH5O43196 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
MSH5O43196 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC27.27■■□□□ 1.96
MSH5O43196 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms