RNA–Protein interactions for RNA: ENST00000564354.1

AP000842.3-201, humanhuman

TSL 3 BASIC

Gene AP000842.3, Length 808 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP000842.3-201ENST00000564354 AEBP2Q6ZN18 517 aaPredicted RBP36.48■■■■□ 3.43
AP000842.3-201ENST00000564354 CHIC1Q5VXU3 224 aa34.41■■■■□ 3.1
AP000842.3-201ENST00000564354 SENP3Q9H4L4 574 aaPredicted RBP31.15■■■□□ 2.58
AP000842.3-201ENST00000564354 PHF23Q9BUL5 403 aaPredicted RBP30.69■■■□□ 2.5
AP000842.3-201ENST00000564354 FOXD1Q16676 465 aa29.05■■■□□ 2.24
AP000842.3-201ENST00000564354 PLPPR3Q6T4P5 718 aa27.38■■□□□ 1.97
AP000842.3-201ENST00000564354 MSH5O43196 834 aa27.29■■□□□ 1.96
AP000842.3-201ENST00000564354 POTEDQ86YR6 584 aa27.07■■□□□ 1.92
AP000842.3-201ENST00000564354 PIAS4Q8N2W9 510 aaPredicted RBP27.07■■□□□ 1.92
AP000842.3-201ENST00000564354 PPP6R1Q9UPN7 881 aa26.98■■□□□ 1.91
AP000842.3-201ENST00000564354 ADRA2BP18089 450 aa26.85■■□□□ 1.89
AP000842.3-201ENST00000564354 MAPK8IP2Q13387 824 aaPredicted RBP24.73■■□□□ 1.55
AP000842.3-201ENST00000564354 DMRT2Q9Y5R5 561 aa24.68■■□□□ 1.54
AP000842.3-201ENST00000564354 SCAF1Q9H7N4 1312 aaKnown RBP24.59■■□□□ 1.53
AP000842.3-201ENST00000564354 PPP4R3CPQ6ZMV5 832 aa23.95■■□□□ 1.42
AP000842.3-201ENST00000564354 HOXD11P31277 338 aaPredicted RBP23.69■■□□□ 1.38
AP000842.3-201ENST00000564354 DCAF8L1A6NGE4 600 aa23.58■■□□□ 1.37
AP000842.3-201ENST00000564354 CNKSR2Q8WXI2 1034 aa23.57■■□□□ 1.36
AP000842.3-201ENST00000564354 CACNB1Q02641 598 aaPredicted RBP23.53■■□□□ 1.36
AP000842.3-201ENST00000564354 RNF216Q9NWF9 866 aaPredicted RBP23.43■■□□□ 1.34
AP000842.3-201ENST00000564354 RNF39Q9H2S5 420 aa23.28■■□□□ 1.32
AP000842.3-201ENST00000564354 DNAJC5BQ9UF47 199 aa22.97■■□□□ 1.27
AP000842.3-201ENST00000564354 NCBP3Q53F19 620 aaKnown RBP22.95■■□□□ 1.26
AP000842.3-201ENST00000564354 C1QBPQ07021 282 aaKnown RBP22.92■■□□□ 1.26
AP000842.3-201ENST00000564354 NPM3O75607 178 aaKnown RBP22.63■■□□□ 1.21
AP000842.3-201ENST00000564354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.5■■□□□ 1.19
AP000842.3-201ENST00000564354 U3KPZ7 1027 aaPredicted RBP22.04■■□□□ 1.12
AP000842.3-201ENST00000564354 KCNA4P22459 653 aa21.97■■□□□ 1.11
AP000842.3-201ENST00000564354 SPINK5Q9NQ38 1064 aaPredicted RBP21.77■■□□□ 1.08
AP000842.3-201ENST00000564354 CAPN15O75808 1086 aa21.72■■□□□ 1.07
AP000842.3-201ENST00000564354 DSG3P32926 999 aa21.71■■□□□ 1.07
AP000842.3-201ENST00000564354 SLC4A2P04920 1241 aa21.69■■□□□ 1.06
AP000842.3-201ENST00000564354 APLP2Q06481 763 aa21.4■■□□□ 1.02
AP000842.3-201ENST00000564354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.33■■□□□ 1.01
AP000842.3-201ENST00000564354 HNRNPUL2Q1KMD3 747 aaKnown RBP21.33■■□□□ 1.01
AP000842.3-201ENST00000564354 TRHP20396 242 aaPredicted RBP21.31■■□□□ 1
AP000842.3-201ENST00000564354 ZNF219Q9P2Y4 722 aaPredicted RBP21.31■■□□□ 1
AP000842.3-201ENST00000564354 ABCB7O75027 752 aa21.2■□□□□ 0.98
AP000842.3-201ENST00000564354 SAMD1Q6SPF0 538 aaPredicted RBP21.2■□□□□ 0.98
AP000842.3-201ENST00000564354 POTEHQ6S545 545 aa21.14■□□□□ 0.97
AP000842.3-201ENST00000564354 MYCNP04198 464 aaPredicted RBP20.95■□□□□ 0.94
AP000842.3-201ENST00000564354 RBM42Q9BTD8 480 aaKnown RBP20.72■□□□□ 0.91
AP000842.3-201ENST00000564354 POLA2Q14181 598 aa20.7■□□□□ 0.9
AP000842.3-201ENST00000564354 SLC4A1APQ9BWU0 796 aaKnown RBP20.68■□□□□ 0.9
AP000842.3-201ENST00000564354 FOXD4L1Q9NU39 408 aa20.59■□□□□ 0.89
AP000842.3-201ENST00000564354 ATF5Q9Y2D1 282 aaPredicted RBP20.47■□□□□ 0.87
AP000842.3-201ENST00000564354 CHRDL2Q6WN34 429 aa20.34■□□□□ 0.85
AP000842.3-201ENST00000564354 ZBTB12Q9Y330 459 aaPredicted RBP20.3■□□□□ 0.84
AP000842.3-201ENST00000564354 ZBTB22O15209 634 aa20.21■□□□□ 0.83
AP000842.3-201ENST00000564354 AKT1S1Q96B36 256 aa20.2■□□□□ 0.82
AP000842.3-201ENST00000564354 OSCARQ8IYS5 282 aa20.06■□□□□ 0.8
AP000842.3-201ENST00000564354 ATXN8OSP0DMR3 200 aa20.02■□□□□ 0.8
AP000842.3-201ENST00000564354 REM2Q8IYK8 340 aaPredicted RBP19.99■□□□□ 0.79
AP000842.3-201ENST00000564354 PIP4P2Q8N4L2 257 aa19.81■□□□□ 0.76
AP000842.3-201ENST00000564354 PITPNM1O00562 1244 aa19.78■□□□□ 0.76
AP000842.3-201ENST00000564354 SP7Q8TDD2 431 aaPredicted RBP19.71■□□□□ 0.75
AP000842.3-201ENST00000564354 FXR2P51116 673 aaKnown RBP eCLIP19.68■□□□□ 0.74
AP000842.3-201ENST00000564354 FBLN2P98095 1184 aa19.67■□□□□ 0.74
AP000842.3-201ENST00000564354 SPDYE2BA6NHP3 402 aa19.66■□□□□ 0.74
AP000842.3-201ENST00000564354 SPDYE6P0CI01 402 aa19.66■□□□□ 0.74
AP000842.3-201ENST00000564354 SPDYE2Q495Y8 402 aa19.66■□□□□ 0.74
AP000842.3-201ENST00000564354 MKRN4PQ13434 485 aaPredicted RBP19.52■□□□□ 0.72
AP000842.3-201ENST00000564354 HAX1O00165 279 aa19.48■□□□□ 0.71
AP000842.3-201ENST00000564354 SSUH2Q9Y2M2 353 aa19.39■□□□□ 0.69
AP000842.3-201ENST00000564354 SPDYE1Q8NFV5 336 aaPredicted RBP19.36■□□□□ 0.69
AP000842.3-201ENST00000564354 ZNF692Q9BU19 519 aaPredicted RBP19.35■□□□□ 0.69
AP000842.3-201ENST00000564354 CLEC11AQ9Y240 323 aa19.29■□□□□ 0.68
AP000842.3-201ENST00000564354 PRKAR2AP13861 404 aaKnown RBP19.25■□□□□ 0.67
AP000842.3-201ENST00000564354 EVX2Q03828 476 aa19.25■□□□□ 0.67
AP000842.3-201ENST00000564354 C19orf67A6NJJ6 358 aa19.06■□□□□ 0.64
AP000842.3-201ENST00000564354 PABPN1Q86U42 306 aaKnown RBP eCLIP19.06■□□□□ 0.64
AP000842.3-201ENST00000564354 CSRNP3Q8WYN3 585 aa19.05■□□□□ 0.64
AP000842.3-201ENST00000564354 CHADLQ6NUI6 762 aa18.97■□□□□ 0.63
AP000842.3-201ENST00000564354 PRR29P0C7W0 189 aa18.96■□□□□ 0.63
AP000842.3-201ENST00000564354 GABBR2O75899 941 aa18.81■□□□□ 0.6
AP000842.3-201ENST00000564354 FARP1Q9Y4F1 1045 aaPredicted RBP18.68■□□□□ 0.58
AP000842.3-201ENST00000564354 EHMT2Q96KQ7 1210 aa18.65■□□□□ 0.58
AP000842.3-201ENST00000564354 CD44P16070 742 aaKnown RBP18.62■□□□□ 0.57
AP000842.3-201ENST00000564354 STAG3Q9UJ98 1225 aa18.51■□□□□ 0.55
AP000842.3-201ENST00000564354 CLCN6P51797 869 aa18.48■□□□□ 0.55
AP000842.3-201ENST00000564354 LHX8Q68G74 356 aa18.47■□□□□ 0.55
AP000842.3-201ENST00000564354 CREBZFQ9NS37 354 aa18.46■□□□□ 0.55
AP000842.3-201ENST00000564354 SPDYE4A6NLX3 237 aa18.45■□□□□ 0.54
AP000842.3-201ENST00000564354 POTEIP0CG38 1075 aa18.43■□□□□ 0.54
AP000842.3-201ENST00000564354 ZNF579Q8NAF0 562 aaKnown RBP18.37■□□□□ 0.53
AP000842.3-201ENST00000564354 ZRANB1Q9UGI0 708 aa18.32■□□□□ 0.52
AP000842.3-201ENST00000564354 DCBLD2Q96PD2 775 aa18.22■□□□□ 0.51
AP000842.3-201ENST00000564354 MNX1P50219 401 aaPredicted RBP18.14■□□□□ 0.49
AP000842.3-201ENST00000564354 GALR2O43603 387 aaPredicted RBP18.13■□□□□ 0.49
AP000842.3-201ENST00000564354 PAK3O75914 559 aaPredicted RBP18.11■□□□□ 0.49
AP000842.3-201ENST00000564354 NPM1P06748 294 aaKnown RBP eCLIP18.1■□□□□ 0.49
AP000842.3-201ENST00000564354 PROM2Q8N271 834 aa18.05■□□□□ 0.48
AP000842.3-201ENST00000564354 PHF12Q96QT6 1004 aa18.04■□□□□ 0.48
AP000842.3-201ENST00000564354 PLSCR2Q9NRY7 297 aa17.83■□□□□ 0.44
AP000842.3-201ENST00000564354 POTEB2H3BUK9 544 aa17.81■□□□□ 0.44
AP000842.3-201ENST00000564354 MS4A3Q96HJ5 214 aa17.81■□□□□ 0.44
AP000842.3-201ENST00000564354 PELP1Q8IZL8 1130 aaKnown RBP17.8■□□□□ 0.44
AP000842.3-201ENST00000564354 OTUD5Q96G74 571 aa17.79■□□□□ 0.44
AP000842.3-201ENST00000564354 ASTLQ6HA08 431 aaPredicted RBP17.77■□□□□ 0.44
AP000842.3-201ENST00000564354 TSPYL2Q9H2G4 693 aaPredicted RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms