Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC093503.3-201ENST00000624917 2352 ntBASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC068587.7-201ENST00000641602 218 ntBASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC099778.1-201ENST00000568593 1911 ntBASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC007613.1-201ENST00000572811 2597 ntBASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COMMD3-BMI1R4GMX3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COMMD3-BMI1R4GMX3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COMMD3-BMI1R4GMX3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.08■□□□□ 0.65
COMMD3-BMI1R4GMX3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC087239.1-201ENST00000622671 572 ntBASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
COMMD3-BMI1R4GMX3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 AL049812.1-201ENST00000432563 2267 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms