Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 AC087633.2-202ENST00000565166 1439 ntBASIC18.54■□□□□ 0.56
SHANK1Q9Y566 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHANK1Q9Y566 AC026471.6-201ENST00000622954 1905 ntBASIC18.54■□□□□ 0.56
SHANK1Q9Y566 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 RARRES2P10-201ENST00000564312 460 ntBASIC18.53■□□□□ 0.56
SHANK1Q9Y566 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
SHANK1Q9Y566 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 AC242852.2-201ENST00000615738 1807 ntBASIC18.52■□□□□ 0.56
SHANK1Q9Y566 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
SHANK1Q9Y566 AL353708.3-201ENST00000610272 989 ntBASIC18.52■□□□□ 0.56
SHANK1Q9Y566 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHANK1Q9Y566 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.52■□□□□ 0.55
SHANK1Q9Y566 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHANK1Q9Y566 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK1Q9Y566 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 KRASP1-201ENST00000407852 552 ntBASIC18.51■□□□□ 0.55
SHANK1Q9Y566 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 KRT18P35-201ENST00000510488 1269 ntBASIC18.51■□□□□ 0.55
SHANK1Q9Y566 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 AP001412.1-201ENST00000608405 714 ntBASIC18.51■□□□□ 0.55
SHANK1Q9Y566 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK1Q9Y566 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.5■□□□□ 0.55
SHANK1Q9Y566 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 AC110285.5-201ENST00000611501 352 ntBASIC18.49■□□□□ 0.55
SHANK1Q9Y566 AC120498.8-201ENST00000614275 531 ntBASIC18.49■□□□□ 0.55
SHANK1Q9Y566 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 CYP21A1P-202ENST00000354927 1481 ntBASIC18.49■□□□□ 0.55
SHANK1Q9Y566 AC010542.4-201ENST00000563151 1910 ntBASIC18.49■□□□□ 0.55
SHANK1Q9Y566 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 TMPOP1-202ENST00000424642 1267 ntBASIC18.49■□□□□ 0.55
SHANK1Q9Y566 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SHANK1Q9Y566 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms