Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 PGM5P4-201ENST00000421970 445 ntBASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 AC087633.2-202ENST00000565166 1439 ntBASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 AL589743.5-201ENST00000616611 1050 ntBASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM39Q9HCM9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 RNF165-205ENST00000588679 2904 ntBASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM39Q9HCM9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
TRIM39Q9HCM9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
TRIM39Q9HCM9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM39Q9HCM9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 AC098934.4-201ENST00000564127 592 ntBASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM39Q9HCM9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 DUSP5P2-201ENST00000426873 1033 ntBASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms