Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXN4Q96NZ1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN4Q96NZ1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN4Q96NZ1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXN4Q96NZ1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
FOXN4Q96NZ1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.27■□□□□ 0.51
FOXN4Q96NZ1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 AL121603.2-201ENST00000557373 2117 ntBASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 AC112907.3-201ENST00000577781 2400 ntBASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 AC080038.1-201ENST00000611274 1154 ntBASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 GABARAPL3-202ENST00000624044 1851 ntBASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN4Q96NZ1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 ID1-201ENST00000376105 1233 ntBASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 AC006015.1-201ENST00000429970 570 ntBASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
FOXN4Q96NZ1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
FOXN4Q96NZ1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 AC020907.5-201ENST00000624372 1936 ntBASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXN4Q96NZ1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms