Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS39Q96JC1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS39Q96JC1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS39Q96JC1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS39Q96JC1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VPS39Q96JC1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS39Q96JC1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS39Q96JC1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 AC116050.2-201ENST00000612102 1779 ntBASIC20.42■□□□□ 0.86
VPS39Q96JC1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS39Q96JC1 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS39Q96JC1 AC092720.2-201ENST00000602388 1665 ntBASIC20.42■□□□□ 0.86
VPS39Q96JC1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 AC112907.3-201ENST00000577781 2400 ntBASIC20.41■□□□□ 0.86
VPS39Q96JC1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 KRT18P20-201ENST00000548986 1279 ntBASIC20.41■□□□□ 0.86
VPS39Q96JC1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 CCDC92B-201ENST00000575506 885 ntBASIC20.41■□□□□ 0.86
VPS39Q96JC1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS39Q96JC1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS39Q96JC1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS39Q96JC1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS39Q96JC1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS39Q96JC1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS39Q96JC1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS39Q96JC1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS39Q96JC1 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 AC099778.1-201ENST00000568593 1911 ntBASIC20.4■□□□□ 0.86
VPS39Q96JC1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
VPS39Q96JC1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms