Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRCH3Q96II8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.22■■□□□ 1.15
LRCH3Q96II8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 AC009947.2-201ENST00000444014 672 ntBASIC22.22■■□□□ 1.15
LRCH3Q96II8 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.22■■□□□ 1.15
LRCH3Q96II8 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC22.22■■□□□ 1.15
LRCH3Q96II8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRCH3Q96II8 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.21■■□□□ 1.15
LRCH3Q96II8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LRCH3Q96II8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC22.21■■□□□ 1.15
LRCH3Q96II8 NUDT16P1-203ENST00000513809 620 ntBASIC22.21■■□□□ 1.15
LRCH3Q96II8 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LRCH3Q96II8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.21■■□□□ 1.15
LRCH3Q96II8 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.21■■□□□ 1.15
LRCH3Q96II8 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRCH3Q96II8 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRCH3Q96II8 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.2■■□□□ 1.14
LRCH3Q96II8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRCH3Q96II8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC22.2■■□□□ 1.14
LRCH3Q96II8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRCH3Q96II8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRCH3Q96II8 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.2■■□□□ 1.14
LRCH3Q96II8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.2■■□□□ 1.14
LRCH3Q96II8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRCH3Q96II8 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.19■■□□□ 1.14
LRCH3Q96II8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.19■■□□□ 1.14
LRCH3Q96II8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC22.19■■□□□ 1.14
LRCH3Q96II8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.19■■□□□ 1.14
LRCH3Q96II8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
LRCH3Q96II8 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRCH3Q96II8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.18■■□□□ 1.14
LRCH3Q96II8 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRCH3Q96II8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRCH3Q96II8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
LRCH3Q96II8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRCH3Q96II8 CYP21A1P-202ENST00000354927 1481 ntBASIC22.18■■□□□ 1.14
LRCH3Q96II8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC22.18■■□□□ 1.14
LRCH3Q96II8 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRCH3Q96II8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC22.18■■□□□ 1.14
LRCH3Q96II8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.18■■□□□ 1.14
LRCH3Q96II8 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.18■■□□□ 1.14
LRCH3Q96II8 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRCH3Q96II8 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LRCH3Q96II8 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 LIN28AP1-201ENST00000429574 405 ntBASIC22.17■■□□□ 1.14
LRCH3Q96II8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 AC022616.7-201ENST00000525383 220 ntBASIC22.17■■□□□ 1.14
LRCH3Q96II8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 AC005829.2-201ENST00000571422 1056 ntBASIC22.17■■□□□ 1.14
LRCH3Q96II8 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRCH3Q96II8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.17■■□□□ 1.14
LRCH3Q96II8 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 AL353807.1-201ENST00000427475 662 ntBASIC22.16■■□□□ 1.14
LRCH3Q96II8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 ATP5G1P1-201ENST00000448724 379 ntBASIC22.16■■□□□ 1.14
LRCH3Q96II8 AC245052.3-201ENST00000450182 901 ntBASIC22.16■■□□□ 1.14
LRCH3Q96II8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.16■■□□□ 1.14
LRCH3Q96II8 FITM1-202ENST00000559294 800 ntBASIC22.16■■□□□ 1.14
LRCH3Q96II8 AC073195.1-201ENST00000607241 877 ntBASIC22.16■■□□□ 1.14
LRCH3Q96II8 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.16■■□□□ 1.14
LRCH3Q96II8 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRCH3Q96II8 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms