Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CCDC28AQ8IWP9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC28AQ8IWP9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 DUX4L18-201ENST00000553347 1267 ntBASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC28AQ8IWP9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17■□□□□ 0.31
CCDC28AQ8IWP9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC28AQ8IWP9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms