Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 LINC01006-201ENST00000333319 2292 ntBASIC21.36■■□□□ 1.01
RNF43Q68DV7 AC007952.6-201ENST00000573168 2673 ntBASIC21.36■■□□□ 1.01
RNF43Q68DV7 AC003957.1-201ENST00000625108 2673 ntBASIC21.36■■□□□ 1.01
RNF43Q68DV7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 FAM21FP-204ENST00000608637 956 ntBASIC21.36■■□□□ 1.01
RNF43Q68DV7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF43Q68DV7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF43Q68DV7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 PRORSD1P-201ENST00000295112 541 ntBASIC21.35■■□□□ 1.01
RNF43Q68DV7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF43Q68DV7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RNF43Q68DV7 RNF165-205ENST00000588679 2904 ntBASIC21.34■■□□□ 1.01
RNF43Q68DV7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.34■■□□□ 1.01
RNF43Q68DV7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF43Q68DV7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.34■■□□□ 1.01
RNF43Q68DV7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.34■■□□□ 1.01
RNF43Q68DV7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF43Q68DV7 MIR4758-201ENST00000577688 71 ntBASIC21.34■■□□□ 1.01
RNF43Q68DV7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF43Q68DV7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 AP006294.2-201ENST00000641667 209 ntBASIC21.34■■□□□ 1.01
RNF43Q68DV7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
RNF43Q68DV7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF43Q68DV7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF43Q68DV7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.33■■□□□ 1.01
RNF43Q68DV7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
RNF43Q68DV7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.33■■□□□ 1.01
RNF43Q68DV7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.33■■□□□ 1.01
RNF43Q68DV7 AC008694.1-202ENST00000636953 945 ntBASIC21.33■■□□□ 1.01
RNF43Q68DV7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RNF43Q68DV7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.33■■□□□ 1.01
RNF43Q68DV7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
RNF43Q68DV7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF43Q68DV7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF43Q68DV7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.33■■□□□ 1
RNF43Q68DV7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
RNF43Q68DV7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
RNF43Q68DV7 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNF43Q68DV7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.32■■□□□ 1
RNF43Q68DV7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
RNF43Q68DV7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNF43Q68DV7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.32■■□□□ 1
RNF43Q68DV7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 MIPEPP3-201ENST00000412105 444 ntBASIC21.32■■□□□ 1
RNF43Q68DV7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF43Q68DV7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
RNF43Q68DV7 MKRN4P-201ENST00000444706 1521 ntBASIC21.32■■□□□ 1
RNF43Q68DV7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms