Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HOXA3O43365 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXA3O43365 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.42■□□□□ 0.22
HOXA3O43365 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.42■□□□□ 0.22
HOXA3O43365 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HOXA3O43365 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
HOXA3O43365 AL596275.1-201ENST00000423464 877 ntBASIC16.42■□□□□ 0.22
HOXA3O43365 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXA3O43365 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.42■□□□□ 0.22
HOXA3O43365 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.42■□□□□ 0.22
HOXA3O43365 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 RPPH1-201ENST00000516869 333 ntBASIC16.42■□□□□ 0.22
HOXA3O43365 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.42■□□□□ 0.22
HOXA3O43365 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.42■□□□□ 0.22
HOXA3O43365 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
HOXA3O43365 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HOXA3O43365 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXA3O43365 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXA3O43365 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXA3O43365 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HOXA3O43365 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.42■□□□□ 0.22
HOXA3O43365 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXA3O43365 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HOXA3O43365 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
HOXA3O43365 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXA3O43365 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.41■□□□□ 0.22
HOXA3O43365 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXA3O43365 AC008550.1-201ENST00000511500 884 ntBASIC16.41■□□□□ 0.22
HOXA3O43365 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.41■□□□□ 0.22
HOXA3O43365 C2orf69P4-201ENST00000565394 541 ntBASIC16.41■□□□□ 0.22
HOXA3O43365 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXA3O43365 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXA3O43365 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.41■□□□□ 0.22
HOXA3O43365 AC087633.2-202ENST00000565166 1439 ntBASIC16.41■□□□□ 0.22
HOXA3O43365 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.41■□□□□ 0.22
HOXA3O43365 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HOXA3O43365 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.41■□□□□ 0.22
HOXA3O43365 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA3O43365 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXA3O43365 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 PGM5P4-201ENST00000421970 445 ntBASIC16.4■□□□□ 0.22
HOXA3O43365 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.4■□□□□ 0.22
HOXA3O43365 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.4■□□□□ 0.22
HOXA3O43365 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.4■□□□□ 0.22
HOXA3O43365 AC233263.1-201ENST00000578059 224 ntBASIC16.4■□□□□ 0.22
HOXA3O43365 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
HOXA3O43365 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.4■□□□□ 0.22
HOXA3O43365 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HOXA3O43365 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HOXA3O43365 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA3O43365 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HOXA3O43365 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HOXA3O43365 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
HOXA3O43365 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXA3O43365 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA3O43365 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXA3O43365 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXA3O43365 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HOXA3O43365 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA3O43365 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA3O43365 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA3O43365 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXA3O43365 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.39■□□□□ 0.21
HOXA3O43365 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXA3O43365 RN7SL471P-201ENST00000580476 299 ntBASIC16.39■□□□□ 0.21
HOXA3O43365 AC069544.1-201ENST00000609399 999 ntBASIC16.39■□□□□ 0.21
HOXA3O43365 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA3O43365 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA3O43365 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms