Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
HMGB3O15347 ABHD17AP5-201ENST00000580133 923 ntBASIC16.43■□□□□ 0.22
HMGB3O15347 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB3O15347 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGB3O15347 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB3O15347 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 AC020763.4-201ENST00000623414 4170 ntBASIC16.43■□□□□ 0.22
HMGB3O15347 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
HMGB3O15347 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGB3O15347 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB3O15347 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
HMGB3O15347 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HMGB3O15347 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB3O15347 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGB3O15347 TSPY13P-201ENST00000338964 914 ntBASIC16.42■□□□□ 0.22
HMGB3O15347 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC16.42■□□□□ 0.22
HMGB3O15347 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB3O15347 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB3O15347 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGB3O15347 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB3O15347 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB3O15347 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 AC021242.3-201ENST00000607598 1377 ntBASIC16.41■□□□□ 0.22
HMGB3O15347 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGB3O15347 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 YBX1P4-201ENST00000392794 808 ntBASIC16.41■□□□□ 0.22
HMGB3O15347 AL451085.2-201ENST00000605085 799 ntBASIC16.41■□□□□ 0.22
HMGB3O15347 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB3O15347 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB3O15347 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB3O15347 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB3O15347 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HMGB3O15347 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGB3O15347 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 GUK1-208ENST00000366728 842 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB3O15347 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB3O15347 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
HMGB3O15347 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB3O15347 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HMGB3O15347 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB3O15347 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB3O15347 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB3O15347 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 AC020907.5-201ENST00000624372 1936 ntBASIC16.39■□□□□ 0.21
HMGB3O15347 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB3O15347 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB3O15347 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB3O15347 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HMGB3O15347 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB3O15347 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms