Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 AC245052.3-201ENST00000450182 901 ntBASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 AC079140.4-201ENST00000507448 529 ntBASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 AL354811.1-201ENST00000610286 706 ntBASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 AC110285.6-201ENST00000617652 491 ntBASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 KRT87P-202ENST00000534226 1464 ntBASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM49D1C9J1S8 SMG8-203ENST00000578922 2178 ntBASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 AL031432.3-201ENST00000607698 485 ntBASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.42■□□□□ 0.86
TRIM49D1C9J1S8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 MIR2861-201ENST00000636310 90 ntBASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 KRT16P2-201ENST00000414673 1423 ntBASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM49D1C9J1S8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 AC138907.5-202ENST00000569484 235 ntBASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM49D1C9J1S8 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM49D1C9J1S8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.86
TRIM49D1C9J1S8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM49D1C9J1S8 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 MIR6084-201ENST00000622012 110 ntBASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms