Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 MYCBP2-209ENST00000491491 649 ntTSL 529.76■■■□□ 2.358e-6■■■□□ 18.6
NIP7Q9Y221 ABCA13-201ENST00000411975 4480 ntTSL 213.9□□□□□ -0.183e-8■■■□□ 18.6
NIP7Q9Y221 ABCA13-205ENST00000453246 4275 ntTSL 211.28□□□□□ -0.63e-8■■■□□ 18.6
NIP7Q9Y221 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.98e-6■■■□□ 18.6
NIP7Q9Y221 ABCA13-207ENST00000544596 7870 ntAPPRIS ALT2 TSL 1 (best)9.12□□□□□ -0.953e-8■■■□□ 18.6
NIP7Q9Y221 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.593e-8■■■□□ 18.6
NIP7Q9Y221 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.668e-6■■■□□ 18.6
NIP7Q9Y221 NOP56-208ENST00000467857 735 ntTSL 210.79□□□□□ -0.681e-323■■■□□ 18.5
NIP7Q9Y221 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.09■■□□□ 1.934e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-202ENST00000460517 604 ntTSL 326.63■■□□□ 1.854e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-209ENST00000479238 697 ntTSL 325.12■■□□□ 1.614e-6■■■□□ 18.5
NIP7Q9Y221 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.616e-7■■■□□ 18.5
NIP7Q9Y221 WWTR1-208ENST00000475579 578 ntTSL 422.09■■□□□ 1.134e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 14e-6■■■□□ 18.5
NIP7Q9Y221 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.91■□□□□ 0.946e-7■■■□□ 18.5
NIP7Q9Y221 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.794e-6■■■□□ 18.5
NIP7Q9Y221 PCK1-204ENST00000475833 1037 ntTSL 216.82■□□□□ 0.284e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.124e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-211ENST00000485352 503 ntTSL 315.54■□□□□ 0.084e-6■■■□□ 18.5
NIP7Q9Y221 ALB-210ENST00000504043 422 ntTSL 24.15□□□□□ -1.752e-74■■■□□ 18.5
NIP7Q9Y221 SNORD48-201ENST00000364953 64 ntBASIC1.99□□□□□ -2.091e-323■■■□□ 18.4
NIP7Q9Y221 PWAR5-201ENST00000624480 3180 ntBASIC10.08□□□□□ -0.89e-21■■■□□ 18.1
NIP7Q9Y221 AC124312.4-201ENST00000605533 310 ntBASIC4.21□□□□□ -1.749e-21■■■□□ 18.1
NIP7Q9Y221 SNORD64-201ENST00000386683 67 ntBASIC-0.99□□□□□ -2.579e-21■■■□□ 18.1
NIP7Q9Y221 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.911e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-216ENST00000492135 1143 ntTSL 1 (best)18.5■□□□□ 0.551e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-220ENST00000616692 2662 ntTSL 1 (best)17.43■□□□□ 0.381e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-219ENST00000612233 2980 nt15.96■□□□□ 0.151e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-206ENST00000466447 1094 ntTSL 215.63■□□□□ 0.091e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-215ENST00000490753 640 ntTSL 212.98□□□□□ -0.331e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-202ENST00000415272 1628 ntTSL 512.74□□□□□ -0.371e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-205ENST00000462630 859 ntTSL 212.39□□□□□ -0.431e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-207ENST00000467196 1320 ntTSL 511.45□□□□□ -0.581e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-211ENST00000471023 592 ntTSL 29.5□□□□□ -0.891e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-212ENST00000480447 651 ntTSL 28.25□□□□□ -1.091e-323■■■□□ 17.9
NIP7Q9Y221 SNORD57-201ENST00000448188 72 ntBASIC-1.27□□□□□ -2.611e-323■■■□□ 17.9
NIP7Q9Y221 TRRAP-203ENST00000417523 550 ntTSL 422.08■■□□□ 1.137e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.117e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.117e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.147e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.347e-16■■■□□ 17.9
NIP7Q9Y221 IPO7-201ENST00000379719 6191 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.283e-24■■■□□ 17.8
NIP7Q9Y221 SNORA23-201ENST00000365128 182 ntBASIC2.83□□□□□ -1.963e-24■■■□□ 17.8
NIP7Q9Y221 SNORD116-24-201ENST00000384549 92 ntBASIC-1.24□□□□□ -2.615e-22■■■□□ 17.6
NIP7Q9Y221 SNORD111-201ENST00000408139 94 ntBASIC0.79□□□□□ -2.281e-11■■■□□ 17.5
NIP7Q9Y221 NOP58-207ENST00000478941 508 ntTSL 37.99□□□□□ -1.132e-44■■■□□ 17.5
NIP7Q9Y221 RPL7A-203ENST00000426651 1057 ntTSL 526.12■■□□□ 1.771e-323■■■□□ 17.4
NIP7Q9Y221 RPL7A-209ENST00000496554 947 ntTSL 223.61■■□□□ 1.371e-323■■■□□ 17.4
NIP7Q9Y221 RPL7A-206ENST00000485706 743 ntTSL 215.26■□□□□ 0.031e-323■■■□□ 17.4
NIP7Q9Y221 SNORD24-201ENST00000383884 75 ntBASIC0.87□□□□□ -2.271e-323■■■□□ 17.4
NIP7Q9Y221 SNORD116-26-201ENST00000516006 96 ntBASIC4.35□□□□□ -1.713e-22■■■□□ 17.4
NIP7Q9Y221 GAS5-228ENST00000456812 723 ntTSL 38.9□□□□□ -0.982e-35■■■□□ 17.3
NIP7Q9Y221 GAS5-218ENST00000448718 565 ntTSL 2 BASIC7.72□□□□□ -1.172e-35■■■□□ 17.3
NIP7Q9Y221 GAS5-206ENST00000422183 745 ntTSL 27.62□□□□□ -1.192e-35■■■□□ 17.3
NIP7Q9Y221 GAS5-213ENST00000436285 772 ntTSL 24.39□□□□□ -1.712e-35■■■□□ 17.3
NIP7Q9Y221 SNHG26-201ENST00000415611 1099 ntTSL 5 BASIC13.38□□□□□ -0.271e-12■■■□□ 17.3
NIP7Q9Y221 SNHG26-202ENST00000422542 1106 ntTSL 3 BASIC11.99□□□□□ -0.491e-12■■■□□ 17.3
NIP7Q9Y221 SNHG26-203ENST00000432668 574 ntTSL 35.44□□□□□ -1.541e-12■■■□□ 17.3
NIP7Q9Y221 SNORD93-201ENST00000408813 74 ntBASIC0.51□□□□□ -2.331e-12■■■□□ 17.3
NIP7Q9Y221 RPL4-202ENST00000561554 580 ntTSL 414.59□□□□□ -0.073e-20■■■□□ 17.2
NIP7Q9Y221 RPL4-213ENST00000566624 819 ntTSL 214.53□□□□□ -0.083e-20■■■□□ 17.2
NIP7Q9Y221 SNORD16-201ENST00000362803 99 ntBASIC8.07□□□□□ -1.123e-20■■■□□ 17.2
NIP7Q9Y221 GDF15-203ENST00000595973 890 ntTSL 524.86■■□□□ 1.572e-14■■■□□ 16.8
NIP7Q9Y221 SLC39A4-203ENST00000526658 583 ntTSL 323.81■■□□□ 1.41e-7■■■□□ 16.8
NIP7Q9Y221 GDF15-204ENST00000597765 562 ntTSL 417.69■□□□□ 0.422e-14■■■□□ 16.8
NIP7Q9Y221 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.27■□□□□ 0.521e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC14.22□□□□□ -0.131e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-224ENST00000454068 688 ntTSL 5 BASIC12.51□□□□□ -0.411e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-214ENST00000436656 822 ntTSL 312.43□□□□□ -0.421e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-210ENST00000431268 1698 ntTSL 211.4□□□□□ -0.581e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-219ENST00000449289 542 ntTSL 3 BASIC10.43□□□□□ -0.741e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-220ENST00000449589 712 ntTSL 310.43□□□□□ -0.741e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-201ENST00000412059 979 ntTSL 57.32□□□□□ -1.241e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.98□□□□□ -1.611e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.14□□□□□ -1.911e-35■■■□□ 16.8
NIP7Q9Y221 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.822e-6■■■□□ 16.8
NIP7Q9Y221 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.973e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-206ENST00000466550 756 ntTSL 215.02■□□□□ -03e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-202ENST00000311549 815 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.173e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-201ENST00000272274 616 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.273e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-204ENST00000326092 641 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.353e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-208ENST00000483765 453 ntTSL 34.27□□□□□ -1.733e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-205ENST00000461690 681 ntTSL 53.39□□□□□ -1.873e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-209ENST00000485756 675 ntTSL 22.77□□□□□ -1.973e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-210ENST00000493317 438 ntTSL 21.81□□□□□ -2.123e-27■■■□□ 16.5
NIP7Q9Y221 SNORD70.1-201ENST00000391007 85 ntBASIC2.33□□□□□ -2.043e-44■■■□□ 16.5
NIP7Q9Y221 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.636e-8■■■□□ 16.4
NIP7Q9Y221 POR-209ENST00000439269 1858 ntTSL 2 BASIC22.07■■□□□ 1.123e-7■■■□□ 16.3
NIP7Q9Y221 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.613e-7■■■□□ 16.3
NIP7Q9Y221 POR-216ENST00000454934 2295 ntTSL 318.66■□□□□ 0.583e-7■■■□□ 16.3
NIP7Q9Y221 POR-212ENST00000447222 2332 ntTSL 518.58■□□□□ 0.563e-7■■■□□ 16.3
NIP7Q9Y221 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.87■□□□□ 0.453e-7■■■□□ 16.3
NIP7Q9Y221 POR-202ENST00000412064 1044 ntTSL 517.64■□□□□ 0.413e-7■■■□□ 16.3
NIP7Q9Y221 AL645922.1-202ENST00000477310 3377 ntTSL 5 BASIC12.52□□□□□ -0.411e-7■■■□□ 16.2
NIP7Q9Y221 AL645922.1-201ENST00000456570 3874 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.531e-7■■■□□ 16.2
NIP7Q9Y221 GAS5-205ENST00000422008 497 ntTSL 35.92□□□□□ -1.462e-35■■■□□ 16.2
NIP7Q9Y221 GAS5-215ENST00000442067 1114 ntTSL 25.45□□□□□ -1.542e-35■■■□□ 16.2
NIP7Q9Y221 CHD8-210ENST00000555962 1232 ntTSL 511.5□□□□□ -0.576e-20■■■□□ 16.1
NIP7Q9Y221 SNORD8-201ENST00000363915 110 ntBASIC7.28□□□□□ -1.246e-20■■■□□ 16.1
NIP7Q9Y221 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.87□□□□□ -1.474e-35■■■□□ 16.1
Retrieved 100 of 1,619 protein–RNA pairs in 49.2 ms