Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 MYCBP2-209ENST00000491491 649 ntTSL 529.76■■■□□ 2.358e-6■■■□□ 18.6
NIP7Q9Y221 ABCA13-201ENST00000411975 4480 ntTSL 213.9□□□□□ -0.183e-8■■■□□ 18.6
NIP7Q9Y221 ABCA13-205ENST00000453246 4275 ntTSL 211.28□□□□□ -0.63e-8■■■□□ 18.6
NIP7Q9Y221 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.98e-6■■■□□ 18.6
NIP7Q9Y221 ABCA13-207ENST00000544596 7870 ntAPPRIS ALT2 TSL 1 (best)9.12□□□□□ -0.953e-8■■■□□ 18.6
NIP7Q9Y221 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.593e-8■■■□□ 18.6
NIP7Q9Y221 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.668e-6■■■□□ 18.6
NIP7Q9Y221 NOP56-208ENST00000467857 735 ntTSL 210.79□□□□□ -0.681e-323■■■□□ 18.5
NIP7Q9Y221 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.09■■□□□ 1.934e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-202ENST00000460517 604 ntTSL 326.63■■□□□ 1.854e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-209ENST00000479238 697 ntTSL 325.12■■□□□ 1.614e-6■■■□□ 18.5
NIP7Q9Y221 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.616e-7■■■□□ 18.5
NIP7Q9Y221 WWTR1-208ENST00000475579 578 ntTSL 422.09■■□□□ 1.134e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 14e-6■■■□□ 18.5
NIP7Q9Y221 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.91■□□□□ 0.946e-7■■■□□ 18.5
NIP7Q9Y221 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.794e-6■■■□□ 18.5
NIP7Q9Y221 PCK1-204ENST00000475833 1037 ntTSL 216.82■□□□□ 0.284e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.124e-6■■■□□ 18.5
NIP7Q9Y221 WWTR1-211ENST00000485352 503 ntTSL 315.54■□□□□ 0.084e-6■■■□□ 18.5
NIP7Q9Y221 ALB-210ENST00000504043 422 ntTSL 24.15□□□□□ -1.752e-74■■■□□ 18.5
NIP7Q9Y221 SNORD48-201ENST00000364953 64 ntBASIC1.99□□□□□ -2.091e-323■■■□□ 18.4
NIP7Q9Y221 PWAR5-201ENST00000624480 3180 ntBASIC10.08□□□□□ -0.89e-21■■■□□ 18.1
NIP7Q9Y221 AC124312.4-201ENST00000605533 310 ntBASIC4.21□□□□□ -1.749e-21■■■□□ 18.1
NIP7Q9Y221 SNORD64-201ENST00000386683 67 ntBASIC-0.99□□□□□ -2.579e-21■■■□□ 18.1
NIP7Q9Y221 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.911e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-216ENST00000492135 1143 ntTSL 1 (best)18.5■□□□□ 0.551e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-220ENST00000616692 2662 ntTSL 1 (best)17.43■□□□□ 0.381e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-219ENST00000612233 2980 nt15.96■□□□□ 0.151e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-206ENST00000466447 1094 ntTSL 215.63■□□□□ 0.091e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-215ENST00000490753 640 ntTSL 212.98□□□□□ -0.331e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-202ENST00000415272 1628 ntTSL 512.74□□□□□ -0.371e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-205ENST00000462630 859 ntTSL 212.39□□□□□ -0.431e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-207ENST00000467196 1320 ntTSL 511.45□□□□□ -0.581e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-211ENST00000471023 592 ntTSL 29.5□□□□□ -0.891e-323■■■□□ 17.9
NIP7Q9Y221 NOP56-212ENST00000480447 651 ntTSL 28.25□□□□□ -1.091e-323■■■□□ 17.9
NIP7Q9Y221 SNORD57-201ENST00000448188 72 ntBASIC-1.27□□□□□ -2.611e-323■■■□□ 17.9
NIP7Q9Y221 TRRAP-203ENST00000417523 550 ntTSL 422.08■■□□□ 1.137e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.117e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.117e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.147e-16■■■□□ 17.9
NIP7Q9Y221 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.347e-16■■■□□ 17.9
NIP7Q9Y221 IPO7-201ENST00000379719 6191 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.283e-24■■■□□ 17.8
NIP7Q9Y221 SNORA23-201ENST00000365128 182 ntBASIC2.83□□□□□ -1.963e-24■■■□□ 17.8
NIP7Q9Y221 SNORD116-24-201ENST00000384549 92 ntBASIC-1.24□□□□□ -2.615e-22■■■□□ 17.6
NIP7Q9Y221 SNORD111-201ENST00000408139 94 ntBASIC0.79□□□□□ -2.281e-11■■■□□ 17.5
NIP7Q9Y221 NOP58-207ENST00000478941 508 ntTSL 37.99□□□□□ -1.132e-44■■■□□ 17.5
NIP7Q9Y221 RPL7A-203ENST00000426651 1057 ntTSL 526.12■■□□□ 1.771e-323■■■□□ 17.4
NIP7Q9Y221 RPL7A-209ENST00000496554 947 ntTSL 223.61■■□□□ 1.371e-323■■■□□ 17.4
NIP7Q9Y221 RPL7A-206ENST00000485706 743 ntTSL 215.26■□□□□ 0.031e-323■■■□□ 17.4
NIP7Q9Y221 SNORD24-201ENST00000383884 75 ntBASIC0.87□□□□□ -2.271e-323■■■□□ 17.4
NIP7Q9Y221 SNORD116-26-201ENST00000516006 96 ntBASIC4.35□□□□□ -1.713e-22■■■□□ 17.4
NIP7Q9Y221 GAS5-228ENST00000456812 723 ntTSL 38.9□□□□□ -0.982e-35■■■□□ 17.3
NIP7Q9Y221 GAS5-218ENST00000448718 565 ntTSL 2 BASIC7.72□□□□□ -1.172e-35■■■□□ 17.3
NIP7Q9Y221 GAS5-206ENST00000422183 745 ntTSL 27.62□□□□□ -1.192e-35■■■□□ 17.3
NIP7Q9Y221 GAS5-213ENST00000436285 772 ntTSL 24.39□□□□□ -1.712e-35■■■□□ 17.3
NIP7Q9Y221 SNHG26-201ENST00000415611 1099 ntTSL 5 BASIC13.38□□□□□ -0.271e-12■■■□□ 17.3
NIP7Q9Y221 SNHG26-202ENST00000422542 1106 ntTSL 3 BASIC11.99□□□□□ -0.491e-12■■■□□ 17.3
NIP7Q9Y221 SNHG26-203ENST00000432668 574 ntTSL 35.44□□□□□ -1.541e-12■■■□□ 17.3
NIP7Q9Y221 SNORD93-201ENST00000408813 74 ntBASIC0.51□□□□□ -2.331e-12■■■□□ 17.3
NIP7Q9Y221 RPL4-202ENST00000561554 580 ntTSL 414.59□□□□□ -0.073e-20■■■□□ 17.2
NIP7Q9Y221 RPL4-213ENST00000566624 819 ntTSL 214.53□□□□□ -0.083e-20■■■□□ 17.2
NIP7Q9Y221 SNORD16-201ENST00000362803 99 ntBASIC8.07□□□□□ -1.123e-20■■■□□ 17.2
NIP7Q9Y221 GDF15-203ENST00000595973 890 ntTSL 524.86■■□□□ 1.572e-14■■■□□ 16.8
NIP7Q9Y221 SLC39A4-203ENST00000526658 583 ntTSL 323.81■■□□□ 1.41e-7■■■□□ 16.8
NIP7Q9Y221 GDF15-204ENST00000597765 562 ntTSL 417.69■□□□□ 0.422e-14■■■□□ 16.8
NIP7Q9Y221 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.27■□□□□ 0.521e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC14.22□□□□□ -0.131e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-224ENST00000454068 688 ntTSL 5 BASIC12.51□□□□□ -0.411e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-214ENST00000436656 822 ntTSL 312.43□□□□□ -0.421e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-210ENST00000431268 1698 ntTSL 211.4□□□□□ -0.581e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-219ENST00000449289 542 ntTSL 3 BASIC10.43□□□□□ -0.741e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-220ENST00000449589 712 ntTSL 310.43□□□□□ -0.741e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-201ENST00000412059 979 ntTSL 57.32□□□□□ -1.241e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.98□□□□□ -1.611e-35■■■□□ 16.8
NIP7Q9Y221 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.14□□□□□ -1.911e-35■■■□□ 16.8
NIP7Q9Y221 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.822e-6■■■□□ 16.8
NIP7Q9Y221 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.973e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-206ENST00000466550 756 ntTSL 215.02■□□□□ -03e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-202ENST00000311549 815 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.173e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-201ENST00000272274 616 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.273e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-204ENST00000326092 641 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.353e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-208ENST00000483765 453 ntTSL 34.27□□□□□ -1.733e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-205ENST00000461690 681 ntTSL 53.39□□□□□ -1.873e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-209ENST00000485756 675 ntTSL 22.77□□□□□ -1.973e-27■■■□□ 16.5
NIP7Q9Y221 RPL21-210ENST00000493317 438 ntTSL 21.81□□□□□ -2.123e-27■■■□□ 16.5
NIP7Q9Y221 SNORD70.1-201ENST00000391007 85 ntBASIC2.33□□□□□ -2.043e-44■■■□□ 16.5
NIP7Q9Y221 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.636e-8■■■□□ 16.4
NIP7Q9Y221 POR-209ENST00000439269 1858 ntTSL 2 BASIC22.07■■□□□ 1.123e-7■■■□□ 16.3
NIP7Q9Y221 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.613e-7■■■□□ 16.3
NIP7Q9Y221 POR-216ENST00000454934 2295 ntTSL 318.66■□□□□ 0.583e-7■■■□□ 16.3
NIP7Q9Y221 POR-212ENST00000447222 2332 ntTSL 518.58■□□□□ 0.563e-7■■■□□ 16.3
NIP7Q9Y221 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.87■□□□□ 0.453e-7■■■□□ 16.3
NIP7Q9Y221 POR-202ENST00000412064 1044 ntTSL 517.64■□□□□ 0.413e-7■■■□□ 16.3
NIP7Q9Y221 AL645922.1-202ENST00000477310 3377 ntTSL 5 BASIC12.52□□□□□ -0.411e-7■■■□□ 16.2
NIP7Q9Y221 AL645922.1-201ENST00000456570 3874 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.531e-7■■■□□ 16.2
NIP7Q9Y221 GAS5-205ENST00000422008 497 ntTSL 35.92□□□□□ -1.462e-35■■■□□ 16.2
NIP7Q9Y221 GAS5-215ENST00000442067 1114 ntTSL 25.45□□□□□ -1.542e-35■■■□□ 16.2
NIP7Q9Y221 CHD8-210ENST00000555962 1232 ntTSL 511.5□□□□□ -0.576e-20■■■□□ 16.1
NIP7Q9Y221 SNORD8-201ENST00000363915 110 ntBASIC7.28□□□□□ -1.246e-20■■■□□ 16.1
NIP7Q9Y221 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.87□□□□□ -1.474e-35■■■□□ 16.1
Retrieved 100 of 1,619 protein–RNA pairs in 19.2 ms