Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
DDX41Q9UJV9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.14■■■□□ 2.42
DDX41Q9UJV9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
DDX41Q9UJV9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
DDX41Q9UJV9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
DDX41Q9UJV9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
DDX41Q9UJV9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
DDX41Q9UJV9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
DDX41Q9UJV9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
DDX41Q9UJV9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
DDX41Q9UJV9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
DDX41Q9UJV9 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
DDX41Q9UJV9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
DDX41Q9UJV9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
DDX41Q9UJV9 AC139426.1-201ENST00000568218 2529 ntBASIC30.11■■■□□ 2.41
DDX41Q9UJV9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
DDX41Q9UJV9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.07■■■□□ 2.4
DDX41Q9UJV9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
DDX41Q9UJV9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
DDX41Q9UJV9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
DDX41Q9UJV9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
DDX41Q9UJV9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
DDX41Q9UJV9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.05■■■□□ 2.4
DDX41Q9UJV9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
DDX41Q9UJV9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
DDX41Q9UJV9 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 HLA-V-202ENST00000446817 847 ntBASIC30.03■■■□□ 2.4
DDX41Q9UJV9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
DDX41Q9UJV9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
DDX41Q9UJV9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
DDX41Q9UJV9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30■■■□□ 2.39
DDX41Q9UJV9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.99■■■□□ 2.39
DDX41Q9UJV9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.99■■■□□ 2.39
DDX41Q9UJV9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.99■■■□□ 2.39
DDX41Q9UJV9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.99■■■□□ 2.39
DDX41Q9UJV9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
DDX41Q9UJV9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
DDX41Q9UJV9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
DDX41Q9UJV9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.97■■■□□ 2.39
DDX41Q9UJV9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
DDX41Q9UJV9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
DDX41Q9UJV9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
DDX41Q9UJV9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.95■■■□□ 2.39
DDX41Q9UJV9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.95■■■□□ 2.39
DDX41Q9UJV9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.38
DDX41Q9UJV9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
DDX41Q9UJV9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.94■■■□□ 2.38
DDX41Q9UJV9 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
DDX41Q9UJV9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
DDX41Q9UJV9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
DDX41Q9UJV9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
DDX41Q9UJV9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.91■■■□□ 2.38
DDX41Q9UJV9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.91■■■□□ 2.38
DDX41Q9UJV9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
DDX41Q9UJV9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
DDX41Q9UJV9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
DDX41Q9UJV9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
DDX41Q9UJV9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
DDX41Q9UJV9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
DDX41Q9UJV9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
DDX41Q9UJV9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
DDX41Q9UJV9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
DDX41Q9UJV9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
DDX41Q9UJV9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
DDX41Q9UJV9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
DDX41Q9UJV9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
DDX41Q9UJV9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.85■■■□□ 2.37
DDX41Q9UJV9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.85■■■□□ 2.37
DDX41Q9UJV9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
DDX41Q9UJV9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.85■■■□□ 2.37
DDX41Q9UJV9 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
DDX41Q9UJV9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.84■■■□□ 2.37
DDX41Q9UJV9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
DDX41Q9UJV9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.84■■■□□ 2.37
DDX41Q9UJV9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.83■■■□□ 2.37
DDX41Q9UJV9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
DDX41Q9UJV9 LINC01971-201ENST00000617888 1048 ntBASIC29.81■■■□□ 2.36
DDX41Q9UJV9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.81■■■□□ 2.36
DDX41Q9UJV9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.8■■■□□ 2.36
DDX41Q9UJV9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.8■■■□□ 2.36
DDX41Q9UJV9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.8■■■□□ 2.36
DDX41Q9UJV9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
DDX41Q9UJV9 ABCB10P3-201ENST00000561950 2166 ntBASIC29.79■■■□□ 2.36
DDX41Q9UJV9 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
DDX41Q9UJV9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.79■■■□□ 2.36
DDX41Q9UJV9 DUX4L11-201ENST00000611504 1267 ntBASIC29.78■■■□□ 2.36
DDX41Q9UJV9 DUX4L12-201ENST00000614593 1267 ntBASIC29.78■■■□□ 2.36
DDX41Q9UJV9 DUX4L14-201ENST00000621227 1267 ntBASIC29.78■■■□□ 2.36
DDX41Q9UJV9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.78■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms