Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
TM9SF3Q9HD45 DUX4L12-201ENST00000614593 1267 ntBASIC26.4■■□□□ 1.82
TM9SF3Q9HD45 DUX4L14-201ENST00000621227 1267 ntBASIC26.4■■□□□ 1.82
TM9SF3Q9HD45 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TM9SF3Q9HD45 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.4■■□□□ 1.82
TM9SF3Q9HD45 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.39■■□□□ 1.81
TM9SF3Q9HD45 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TM9SF3Q9HD45 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TM9SF3Q9HD45 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.37■■□□□ 1.81
TM9SF3Q9HD45 AC120057.4-201ENST00000624722 1615 ntBASIC26.37■■□□□ 1.81
TM9SF3Q9HD45 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.36■■□□□ 1.81
TM9SF3Q9HD45 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
TM9SF3Q9HD45 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.36■■□□□ 1.81
TM9SF3Q9HD45 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
TM9SF3Q9HD45 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.35■■□□□ 1.81
TM9SF3Q9HD45 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
TM9SF3Q9HD45 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.35■■□□□ 1.81
TM9SF3Q9HD45 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
TM9SF3Q9HD45 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
TM9SF3Q9HD45 CR559946.2-201ENST00000623684 991 ntBASIC26.34■■□□□ 1.81
TM9SF3Q9HD45 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TM9SF3Q9HD45 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
TM9SF3Q9HD45 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TM9SF3Q9HD45 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
TM9SF3Q9HD45 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
TM9SF3Q9HD45 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TM9SF3Q9HD45 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.31■■□□□ 1.8
TM9SF3Q9HD45 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
TM9SF3Q9HD45 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TM9SF3Q9HD45 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.31■■□□□ 1.8
TM9SF3Q9HD45 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TM9SF3Q9HD45 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
TM9SF3Q9HD45 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.3■■□□□ 1.8
TM9SF3Q9HD45 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
TM9SF3Q9HD45 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TM9SF3Q9HD45 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.29■■□□□ 1.8
TM9SF3Q9HD45 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
TM9SF3Q9HD45 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
TM9SF3Q9HD45 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TM9SF3Q9HD45 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TM9SF3Q9HD45 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.27■■□□□ 1.8
TM9SF3Q9HD45 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.26■■□□□ 1.79
TM9SF3Q9HD45 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.26■■□□□ 1.79
TM9SF3Q9HD45 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TM9SF3Q9HD45 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
TM9SF3Q9HD45 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TM9SF3Q9HD45 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.25■■□□□ 1.79
TM9SF3Q9HD45 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
TM9SF3Q9HD45 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.24■■□□□ 1.79
TM9SF3Q9HD45 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TM9SF3Q9HD45 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TM9SF3Q9HD45 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TM9SF3Q9HD45 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
TM9SF3Q9HD45 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
TM9SF3Q9HD45 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
TM9SF3Q9HD45 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
TM9SF3Q9HD45 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.21■■□□□ 1.79
TM9SF3Q9HD45 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
TM9SF3Q9HD45 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TM9SF3Q9HD45 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.2■■□□□ 1.78
TM9SF3Q9HD45 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TM9SF3Q9HD45 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TM9SF3Q9HD45 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TM9SF3Q9HD45 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
TM9SF3Q9HD45 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
TM9SF3Q9HD45 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.18■■□□□ 1.78
TM9SF3Q9HD45 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
TM9SF3Q9HD45 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TM9SF3Q9HD45 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
TM9SF3Q9HD45 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TM9SF3Q9HD45 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.16■■□□□ 1.78
TM9SF3Q9HD45 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
TM9SF3Q9HD45 HSD17B1P1-201ENST00000590052 955 ntBASIC26.16■■□□□ 1.78
TM9SF3Q9HD45 DUX4L13-201ENST00000554103 1267 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L15-201ENST00000611059 1267 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L23-201ENST00000615195 1269 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L24-201ENST00000617576 1269 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L22-201ENST00000618238 1269 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L20-201ENST00000619712 1269 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L21-201ENST00000622058 1269 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L10-201ENST00000622460 1267 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 DUX4L25-201ENST00000624915 1269 ntBASIC26.15■■□□□ 1.78
TM9SF3Q9HD45 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
TM9SF3Q9HD45 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.14■■□□□ 1.77
TM9SF3Q9HD45 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
TM9SF3Q9HD45 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
TM9SF3Q9HD45 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
TM9SF3Q9HD45 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TM9SF3Q9HD45 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TM9SF3Q9HD45 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.11■■□□□ 1.77
TM9SF3Q9HD45 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
TM9SF3Q9HD45 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.09■■□□□ 1.77
TM9SF3Q9HD45 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms