Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NUCKS1Q9H1E3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
NUCKS1Q9H1E3 CAHM-201ENST00000604200 896 ntBASIC28.39■■■□□ 2.14
NUCKS1Q9H1E3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.13
NUCKS1Q9H1E3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
NUCKS1Q9H1E3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
NUCKS1Q9H1E3 SUZ12P1-203ENST00000578195 985 ntBASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NUCKS1Q9H1E3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.36■■■□□ 2.13
NUCKS1Q9H1E3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.36■■■□□ 2.13
NUCKS1Q9H1E3 AL139393.2-201ENST00000608721 2025 ntBASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
NUCKS1Q9H1E3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
NUCKS1Q9H1E3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.33■■■□□ 2.13
NUCKS1Q9H1E3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NUCKS1Q9H1E3 AC142086.6-201ENST00000621154 1765 ntBASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 AL391121.1-201ENST00000607967 1349 ntBASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 AC010864.1-201ENST00000609407 1511 ntBASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
NUCKS1Q9H1E3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.29■■■□□ 2.12
NUCKS1Q9H1E3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
NUCKS1Q9H1E3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NUCKS1Q9H1E3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
NUCKS1Q9H1E3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NUCKS1Q9H1E3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NUCKS1Q9H1E3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NUCKS1Q9H1E3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
NUCKS1Q9H1E3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
NUCKS1Q9H1E3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NUCKS1Q9H1E3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
NUCKS1Q9H1E3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.21■■■□□ 2.11
NUCKS1Q9H1E3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.2■■■□□ 2.11
NUCKS1Q9H1E3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.2■■■□□ 2.1
NUCKS1Q9H1E3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NUCKS1Q9H1E3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NUCKS1Q9H1E3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
NUCKS1Q9H1E3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
NUCKS1Q9H1E3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NUCKS1Q9H1E3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
NUCKS1Q9H1E3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.12■■■□□ 2.09
NUCKS1Q9H1E3 DRD5P2-201ENST00000421395 2012 ntBASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NUCKS1Q9H1E3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
NUCKS1Q9H1E3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
NUCKS1Q9H1E3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
NUCKS1Q9H1E3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
NUCKS1Q9H1E3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.06■■■□□ 2.08
NUCKS1Q9H1E3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
NUCKS1Q9H1E3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
NUCKS1Q9H1E3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.03■■■□□ 2.08
NUCKS1Q9H1E3 AP004833.2-201ENST00000532228 1454 ntBASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms