Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
VPS52Q8N1B4 DUX4L12-201ENST00000614593 1267 ntBASIC28.48■■■□□ 2.15
VPS52Q8N1B4 LINC01971-201ENST00000617888 1048 ntBASIC28.48■■■□□ 2.15
VPS52Q8N1B4 DUX4L14-201ENST00000621227 1267 ntBASIC28.48■■■□□ 2.15
VPS52Q8N1B4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
VPS52Q8N1B4 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.47■■■□□ 2.15
VPS52Q8N1B4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
VPS52Q8N1B4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.45■■■□□ 2.14
VPS52Q8N1B4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC28.45■■■□□ 2.14
VPS52Q8N1B4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
VPS52Q8N1B4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.44■■■□□ 2.14
VPS52Q8N1B4 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
VPS52Q8N1B4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.42■■■□□ 2.14
VPS52Q8N1B4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.42■■■□□ 2.14
VPS52Q8N1B4 AC120057.4-201ENST00000624722 1615 ntBASIC28.42■■■□□ 2.14
VPS52Q8N1B4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
VPS52Q8N1B4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.41■■■□□ 2.14
VPS52Q8N1B4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
VPS52Q8N1B4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
VPS52Q8N1B4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
VPS52Q8N1B4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
VPS52Q8N1B4 CR559946.2-201ENST00000623684 991 ntBASIC28.4■■■□□ 2.14
VPS52Q8N1B4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
VPS52Q8N1B4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
VPS52Q8N1B4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC28.39■■■□□ 2.14
VPS52Q8N1B4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
VPS52Q8N1B4 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
VPS52Q8N1B4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
VPS52Q8N1B4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.38■■■□□ 2.13
VPS52Q8N1B4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC28.38■■■□□ 2.13
VPS52Q8N1B4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
VPS52Q8N1B4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
VPS52Q8N1B4 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
VPS52Q8N1B4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
VPS52Q8N1B4 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.36■■■□□ 2.13
VPS52Q8N1B4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
VPS52Q8N1B4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS52Q8N1B4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC28.35■■■□□ 2.13
VPS52Q8N1B4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS52Q8N1B4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS52Q8N1B4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS52Q8N1B4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.34■■■□□ 2.13
VPS52Q8N1B4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
VPS52Q8N1B4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC28.32■■■□□ 2.12
VPS52Q8N1B4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
VPS52Q8N1B4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.31■■■□□ 2.12
VPS52Q8N1B4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS52Q8N1B4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC28.3■■■□□ 2.12
VPS52Q8N1B4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
VPS52Q8N1B4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.29■■■□□ 2.12
VPS52Q8N1B4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS52Q8N1B4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.29■■■□□ 2.12
VPS52Q8N1B4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS52Q8N1B4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS52Q8N1B4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS52Q8N1B4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS52Q8N1B4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
VPS52Q8N1B4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
VPS52Q8N1B4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
VPS52Q8N1B4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS52Q8N1B4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS52Q8N1B4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.25■■■□□ 2.11
VPS52Q8N1B4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS52Q8N1B4 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
VPS52Q8N1B4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
VPS52Q8N1B4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS52Q8N1B4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS52Q8N1B4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS52Q8N1B4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
VPS52Q8N1B4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS52Q8N1B4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.23■■■□□ 2.11
VPS52Q8N1B4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
VPS52Q8N1B4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
VPS52Q8N1B4 HSD17B1P1-201ENST00000590052 955 ntBASIC28.22■■■□□ 2.11
VPS52Q8N1B4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS52Q8N1B4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
VPS52Q8N1B4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L13-201ENST00000554103 1267 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L15-201ENST00000611059 1267 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L23-201ENST00000615195 1269 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L24-201ENST00000617576 1269 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L22-201ENST00000618238 1269 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L20-201ENST00000619712 1269 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L21-201ENST00000622058 1269 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L10-201ENST00000622460 1267 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 DUX4L25-201ENST00000624915 1269 ntBASIC28.2■■■□□ 2.1
VPS52Q8N1B4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS52Q8N1B4 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS52Q8N1B4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.19■■■□□ 2.1
VPS52Q8N1B4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS52Q8N1B4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS52Q8N1B4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS52Q8N1B4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS52Q8N1B4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.17■■■□□ 2.1
VPS52Q8N1B4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS52Q8N1B4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
VPS52Q8N1B4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
VPS52Q8N1B4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
VPS52Q8N1B4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.15■■■□□ 2.1
VPS52Q8N1B4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms