Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 LINC01971-201ENST00000617888 1048 ntBASIC32.33■■■□□ 2.77
USP48Q86UV5 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USP48Q86UV5 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP48Q86UV5 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC32.31■■■□□ 2.76
USP48Q86UV5 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
USP48Q86UV5 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.3■■■□□ 2.76
USP48Q86UV5 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC32.3■■■□□ 2.76
USP48Q86UV5 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP48Q86UV5 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.29■■■□□ 2.76
USP48Q86UV5 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
USP48Q86UV5 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP48Q86UV5 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP48Q86UV5 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC32.29■■■□□ 2.76
USP48Q86UV5 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
USP48Q86UV5 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
USP48Q86UV5 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC32.27■■■□□ 2.76
USP48Q86UV5 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP48Q86UV5 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP48Q86UV5 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP48Q86UV5 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
USP48Q86UV5 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.23■■■□□ 2.75
USP48Q86UV5 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
USP48Q86UV5 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC32.23■■■□□ 2.75
USP48Q86UV5 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP48Q86UV5 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP48Q86UV5 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP48Q86UV5 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
USP48Q86UV5 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
USP48Q86UV5 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
USP48Q86UV5 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC32.2■■■□□ 2.75
USP48Q86UV5 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC32.2■■■□□ 2.75
USP48Q86UV5 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
USP48Q86UV5 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC32.16■■■□□ 2.74
USP48Q86UV5 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP48Q86UV5 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP48Q86UV5 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP48Q86UV5 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP48Q86UV5 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP48Q86UV5 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP48Q86UV5 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.74
USP48Q86UV5 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP48Q86UV5 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC32.13■■■□□ 2.73
USP48Q86UV5 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
USP48Q86UV5 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
USP48Q86UV5 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
USP48Q86UV5 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC32.12■■■□□ 2.73
USP48Q86UV5 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
USP48Q86UV5 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.11■■■□□ 2.73
USP48Q86UV5 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP48Q86UV5 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.11■■■□□ 2.73
USP48Q86UV5 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP48Q86UV5 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC32.1■■■□□ 2.73
USP48Q86UV5 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
USP48Q86UV5 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP48Q86UV5 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP48Q86UV5 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP48Q86UV5 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
USP48Q86UV5 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP48Q86UV5 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP48Q86UV5 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
USP48Q86UV5 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.06■■■□□ 2.72
USP48Q86UV5 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC32.06■■■□□ 2.72
USP48Q86UV5 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.06■■■□□ 2.72
USP48Q86UV5 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
USP48Q86UV5 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP48Q86UV5 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
USP48Q86UV5 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.03■■■□□ 2.72
USP48Q86UV5 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.02■■■□□ 2.72
USP48Q86UV5 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
USP48Q86UV5 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
USP48Q86UV5 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC32.01■■■□□ 2.71
USP48Q86UV5 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
USP48Q86UV5 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.99■■■□□ 2.71
USP48Q86UV5 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
USP48Q86UV5 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
USP48Q86UV5 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.99■■■□□ 2.71
USP48Q86UV5 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.99■■■□□ 2.71
USP48Q86UV5 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L13-201ENST00000554103 1267 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L15-201ENST00000611059 1267 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L23-201ENST00000615195 1269 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L24-201ENST00000617576 1269 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L22-201ENST00000618238 1269 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L20-201ENST00000619712 1269 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L21-201ENST00000622058 1269 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L10-201ENST00000622460 1267 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 DUX4L25-201ENST00000624915 1269 ntBASIC31.98■■■□□ 2.71
USP48Q86UV5 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP48Q86UV5 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
USP48Q86UV5 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP48Q86UV5 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
USP48Q86UV5 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.93■■■□□ 2.7
USP48Q86UV5 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP48Q86UV5 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP48Q86UV5 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
USP48Q86UV5 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.92■■■□□ 2.7
USP48Q86UV5 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
USP48Q86UV5 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
USP48Q86UV5 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.91■■■□□ 2.7
USP48Q86UV5 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms