Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.01■□□□□ 0.95
CX3CL1P78423 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CX3CL1P78423 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CX3CL1P78423 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CX3CL1P78423 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CX3CL1P78423 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CX3CL1P78423 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.99■□□□□ 0.95
CX3CL1P78423 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CL1P78423 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CL1P78423 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CX3CL1P78423 ST7-AS1-201ENST00000456775 1889 ntBASIC20.98■□□□□ 0.95
CX3CL1P78423 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.98■□□□□ 0.95
CX3CL1P78423 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CL1P78423 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CX3CL1P78423 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.97■□□□□ 0.95
CX3CL1P78423 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CL1P78423 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CL1P78423 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CL1P78423 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.97■□□□□ 0.95
CX3CL1P78423 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CL1P78423 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CX3CL1P78423 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.97■□□□□ 0.95
CX3CL1P78423 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CL1P78423 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CL1P78423 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CL1P78423 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CX3CL1P78423 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CX3CL1P78423 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CX3CL1P78423 AC005559.1-201ENST00000589661 871 ntBASIC20.94■□□□□ 0.94
CX3CL1P78423 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CX3CL1P78423 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CX3CL1P78423 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CX3CL1P78423 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CX3CL1P78423 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CL1P78423 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CX3CL1P78423 AC139426.1-201ENST00000568218 2529 ntBASIC20.92■□□□□ 0.94
CX3CL1P78423 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CX3CL1P78423 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CX3CL1P78423 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.91■□□□□ 0.94
CX3CL1P78423 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CX3CL1P78423 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CX3CL1P78423 AC010864.1-201ENST00000609407 1511 ntBASIC20.9■□□□□ 0.94
CX3CL1P78423 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CX3CL1P78423 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CX3CL1P78423 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CX3CL1P78423 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CX3CL1P78423 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CX3CL1P78423 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.89■□□□□ 0.93
CX3CL1P78423 AP006261.1-201ENST00000584783 668 ntBASIC20.89■□□□□ 0.93
CX3CL1P78423 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
CX3CL1P78423 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CX3CL1P78423 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
CX3CL1P78423 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.88■□□□□ 0.93
CX3CL1P78423 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CX3CL1P78423 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CX3CL1P78423 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
CX3CL1P78423 MIR3665-201ENST00000578708 105 ntBASIC20.87■□□□□ 0.93
CX3CL1P78423 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.86■□□□□ 0.93
CX3CL1P78423 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CX3CL1P78423 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CX3CL1P78423 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CX3CL1P78423 DUX4L28-201ENST00000623687 678 ntBASIC20.85■□□□□ 0.93
CX3CL1P78423 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CX3CL1P78423 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CX3CL1P78423 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
CX3CL1P78423 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CX3CL1P78423 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CX3CL1P78423 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CX3CL1P78423 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
CX3CL1P78423 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CX3CL1P78423 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CX3CL1P78423 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CX3CL1P78423 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.82■□□□□ 0.92
CX3CL1P78423 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CX3CL1P78423 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CX3CL1P78423 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CX3CL1P78423 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.81■□□□□ 0.92
CX3CL1P78423 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.81■□□□□ 0.92
CX3CL1P78423 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CX3CL1P78423 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CX3CL1P78423 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.8■□□□□ 0.92
CX3CL1P78423 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.8■□□□□ 0.92
CX3CL1P78423 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CX3CL1P78423 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CX3CL1P78423 AL162393.1-201ENST00000437852 946 ntBASIC20.79■□□□□ 0.92
CX3CL1P78423 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CX3CL1P78423 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CX3CL1P78423 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CX3CL1P78423 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.78■□□□□ 0.92
CX3CL1P78423 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.78■□□□□ 0.92
CX3CL1P78423 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CX3CL1P78423 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CX3CL1P78423 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CX3CL1P78423 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.76■□□□□ 0.91
CX3CL1P78423 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CX3CL1P78423 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CX3CL1P78423 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CX3CL1P78423 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CX3CL1P78423 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CX3CL1P78423 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms