Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SPCS3P61009 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.17■□□□□ 0.98
SPCS3P61009 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.16■□□□□ 0.98
SPCS3P61009 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
SPCS3P61009 WASH5P-204ENST00000632292 975 ntBASIC21.16■□□□□ 0.98
SPCS3P61009 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SPCS3P61009 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPCS3P61009 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SPCS3P61009 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.15■□□□□ 0.98
SPCS3P61009 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SPCS3P61009 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.15■□□□□ 0.98
SPCS3P61009 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SPCS3P61009 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SPCS3P61009 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SPCS3P61009 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SPCS3P61009 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SPCS3P61009 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SPCS3P61009 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SPCS3P61009 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SPCS3P61009 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SPCS3P61009 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SPCS3P61009 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPCS3P61009 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.11■□□□□ 0.97
SPCS3P61009 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.11■□□□□ 0.97
SPCS3P61009 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPCS3P61009 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SPCS3P61009 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SPCS3P61009 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SPCS3P61009 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SPCS3P61009 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SPCS3P61009 AL139393.2-201ENST00000608721 2025 ntBASIC21.09■□□□□ 0.97
SPCS3P61009 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.09■□□□□ 0.97
SPCS3P61009 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.09■□□□□ 0.97
SPCS3P61009 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SPCS3P61009 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.08■□□□□ 0.97
SPCS3P61009 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
SPCS3P61009 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SPCS3P61009 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.07■□□□□ 0.96
SPCS3P61009 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SPCS3P61009 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SPCS3P61009 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SPCS3P61009 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPCS3P61009 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.04■□□□□ 0.96
SPCS3P61009 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SPCS3P61009 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.04■□□□□ 0.96
SPCS3P61009 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPCS3P61009 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SPCS3P61009 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SPCS3P61009 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SPCS3P61009 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SPCS3P61009 AL133380.1-201ENST00000506013 324 ntBASIC21.02■□□□□ 0.96
SPCS3P61009 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SPCS3P61009 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SPCS3P61009 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SPCS3P61009 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
SPCS3P61009 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21■□□□□ 0.95
SPCS3P61009 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SPCS3P61009 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SPCS3P61009 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SPCS3P61009 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21■□□□□ 0.95
SPCS3P61009 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SPCS3P61009 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SPCS3P61009 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SPCS3P61009 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SPCS3P61009 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SPCS3P61009 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SPCS3P61009 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SPCS3P61009 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SPCS3P61009 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SPCS3P61009 DRD5P2-201ENST00000421395 2012 ntBASIC20.97■□□□□ 0.95
SPCS3P61009 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SPCS3P61009 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SPCS3P61009 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SPCS3P61009 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SPCS3P61009 AC010864.1-201ENST00000609407 1511 ntBASIC20.96■□□□□ 0.95
SPCS3P61009 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC20.96■□□□□ 0.95
SPCS3P61009 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SPCS3P61009 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.95■□□□□ 0.94
SPCS3P61009 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SPCS3P61009 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPCS3P61009 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.94■□□□□ 0.94
SPCS3P61009 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SPCS3P61009 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPCS3P61009 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPCS3P61009 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.94■□□□□ 0.94
SPCS3P61009 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SPCS3P61009 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.93■□□□□ 0.94
SPCS3P61009 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
SPCS3P61009 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.92■□□□□ 0.94
SPCS3P61009 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SPCS3P61009 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SPCS3P61009 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SPCS3P61009 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SPCS3P61009 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
SPCS3P61009 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
SPCS3P61009 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SPCS3P61009 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SPCS3P61009 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.87■□□□□ 0.93
SPCS3P61009 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SPCS3P61009 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms