Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
SHMT1P34896 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.24■■■□□ 2.59
SHMT1P34896 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHMT1P34896 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SHMT1P34896 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHMT1P34896 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.22■■■□□ 2.59
SHMT1P34896 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.21■■■□□ 2.59
SHMT1P34896 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SHMT1P34896 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.59
SHMT1P34896 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.2■■■□□ 2.58
SHMT1P34896 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHMT1P34896 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
SHMT1P34896 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SHMT1P34896 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.15■■■□□ 2.58
SHMT1P34896 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SHMT1P34896 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.58
SHMT1P34896 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.13■■■□□ 2.57
SHMT1P34896 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHMT1P34896 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SHMT1P34896 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHMT1P34896 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHMT1P34896 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.11■■■□□ 2.57
SHMT1P34896 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHMT1P34896 LINC01971-201ENST00000617888 1048 ntBASIC31.11■■■□□ 2.57
SHMT1P34896 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.1■■■□□ 2.57
SHMT1P34896 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.1■■■□□ 2.57
SHMT1P34896 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHMT1P34896 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.1■■■□□ 2.57
SHMT1P34896 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHMT1P34896 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHMT1P34896 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHMT1P34896 AC010864.1-201ENST00000609407 1511 ntBASIC31.08■■■□□ 2.57
SHMT1P34896 DUX4L11-201ENST00000611504 1267 ntBASIC31.07■■■□□ 2.56
SHMT1P34896 DUX4L12-201ENST00000614593 1267 ntBASIC31.07■■■□□ 2.56
SHMT1P34896 DUX4L14-201ENST00000621227 1267 ntBASIC31.07■■■□□ 2.56
SHMT1P34896 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
SHMT1P34896 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.06■■■□□ 2.56
SHMT1P34896 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SHMT1P34896 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.04■■■□□ 2.56
SHMT1P34896 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.04■■■□□ 2.56
SHMT1P34896 MIR3648-2-201ENST00000581792 180 ntBASIC31.04■■■□□ 2.56
SHMT1P34896 MIR3648-1-201ENST00000615959 180 ntBASIC31.04■■■□□ 2.56
SHMT1P34896 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SHMT1P34896 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHMT1P34896 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHMT1P34896 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.03■■■□□ 2.56
SHMT1P34896 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SHMT1P34896 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.01■■■□□ 2.55
SHMT1P34896 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.01■■■□□ 2.55
SHMT1P34896 CR559946.2-201ENST00000623684 991 ntBASIC31.01■■■□□ 2.55
SHMT1P34896 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.01■■■□□ 2.55
SHMT1P34896 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SHMT1P34896 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHMT1P34896 AC016575.1-201ENST00000607026 382 ntBASIC30.99■■■□□ 2.55
SHMT1P34896 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
SHMT1P34896 MIR639-201ENST00000384974 98 ntBASIC30.98■■■□□ 2.55
SHMT1P34896 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.98■■■□□ 2.55
SHMT1P34896 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
SHMT1P34896 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SHMT1P34896 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
SHMT1P34896 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.95■■■□□ 2.55
SHMT1P34896 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.95■■■□□ 2.55
SHMT1P34896 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHMT1P34896 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHMT1P34896 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.93■■■□□ 2.54
SHMT1P34896 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.93■■■□□ 2.54
SHMT1P34896 MIR4449-201ENST00000578365 66 ntBASIC30.93■■■□□ 2.54
SHMT1P34896 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
SHMT1P34896 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHMT1P34896 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
SHMT1P34896 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHMT1P34896 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHMT1P34896 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.91■■■□□ 2.54
SHMT1P34896 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.91■■■□□ 2.54
SHMT1P34896 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.91■■■□□ 2.54
SHMT1P34896 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SHMT1P34896 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHMT1P34896 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHMT1P34896 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHMT1P34896 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SHMT1P34896 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHMT1P34896 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.88■■■□□ 2.53
SHMT1P34896 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L13-201ENST00000554103 1267 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L15-201ENST00000611059 1267 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L23-201ENST00000615195 1269 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L24-201ENST00000617576 1269 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L22-201ENST00000618238 1269 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L20-201ENST00000619712 1269 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L21-201ENST00000622058 1269 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L10-201ENST00000622460 1267 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 DUX4L25-201ENST00000624915 1269 ntBASIC30.87■■■□□ 2.53
SHMT1P34896 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHMT1P34896 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.87■■■□□ 2.53
SHMT1P34896 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
SHMT1P34896 AL135925.1-201ENST00000605920 1701 ntBASIC30.85■■■□□ 2.53
SHMT1P34896 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.85■■■□□ 2.53
SHMT1P34896 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SHMT1P34896 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.85■■■□□ 2.53
SHMT1P34896 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms