Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.12■■□□□ 1.61
LDLRP01130 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
LDLRP01130 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.11■■□□□ 1.61
LDLRP01130 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
LDLRP01130 AL133380.1-201ENST00000506013 324 ntBASIC25.11■■□□□ 1.61
LDLRP01130 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.11■■□□□ 1.61
LDLRP01130 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
LDLRP01130 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
LDLRP01130 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.09■■□□□ 1.61
LDLRP01130 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LDLRP01130 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
LDLRP01130 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
LDLRP01130 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
LDLRP01130 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
LDLRP01130 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
LDLRP01130 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
LDLRP01130 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
LDLRP01130 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
LDLRP01130 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
LDLRP01130 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
LDLRP01130 HLA-V-202ENST00000446817 847 ntBASIC25.06■■□□□ 1.6
LDLRP01130 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.06■■□□□ 1.6
LDLRP01130 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
LDLRP01130 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LDLRP01130 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
LDLRP01130 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
LDLRP01130 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.04■■□□□ 1.6
LDLRP01130 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.04■■□□□ 1.6
LDLRP01130 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LDLRP01130 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LDLRP01130 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
LDLRP01130 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LDLRP01130 AC087741.3-201ENST00000624270 1347 ntBASIC25.03■■□□□ 1.6
LDLRP01130 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
LDLRP01130 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
LDLRP01130 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.02■■□□□ 1.6
LDLRP01130 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
LDLRP01130 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LDLRP01130 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LDLRP01130 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LDLRP01130 AC142086.6-201ENST00000621154 1765 ntBASIC25■■□□□ 1.59
LDLRP01130 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LDLRP01130 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LDLRP01130 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
LDLRP01130 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.99■■□□□ 1.59
LDLRP01130 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
LDLRP01130 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
LDLRP01130 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
LDLRP01130 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
LDLRP01130 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.97■■□□□ 1.59
LDLRP01130 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
LDLRP01130 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
LDLRP01130 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.96■■□□□ 1.59
LDLRP01130 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.96■■□□□ 1.59
LDLRP01130 DUX4L28-201ENST00000623687 678 ntBASIC24.96■■□□□ 1.59
LDLRP01130 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.96■■□□□ 1.59
LDLRP01130 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
LDLRP01130 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
LDLRP01130 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
LDLRP01130 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.94■■□□□ 1.58
LDLRP01130 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
LDLRP01130 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
LDLRP01130 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.93■■□□□ 1.58
LDLRP01130 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
LDLRP01130 AC044849.2-201ENST00000606596 710 ntBASIC24.93■■□□□ 1.58
LDLRP01130 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
LDLRP01130 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
LDLRP01130 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
LDLRP01130 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
LDLRP01130 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
LDLRP01130 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.92■■□□□ 1.58
LDLRP01130 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC24.91■■□□□ 1.58
LDLRP01130 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
LDLRP01130 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
LDLRP01130 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
LDLRP01130 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC24.88■■□□□ 1.57
LDLRP01130 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
LDLRP01130 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.88■■□□□ 1.57
LDLRP01130 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
LDLRP01130 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
LDLRP01130 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.87■■□□□ 1.57
LDLRP01130 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LDLRP01130 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
LDLRP01130 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.86■■□□□ 1.57
LDLRP01130 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.86■■□□□ 1.57
LDLRP01130 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LDLRP01130 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LDLRP01130 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.86■■□□□ 1.57
LDLRP01130 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
LDLRP01130 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.86■■□□□ 1.57
LDLRP01130 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
LDLRP01130 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LDLRP01130 AL135925.1-201ENST00000605920 1701 ntBASIC24.84■■□□□ 1.57
LDLRP01130 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.84■■□□□ 1.57
LDLRP01130 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
LDLRP01130 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
LDLRP01130 MIR762-201ENST00000390236 83 ntBASIC24.83■■□□□ 1.57
LDLRP01130 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC24.83■■□□□ 1.57
LDLRP01130 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
LDLRP01130 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms