Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH4O15457 AC010864.1-201ENST00000609407 1511 ntBASIC29.83■■■□□ 2.37
MSH4O15457 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.83■■■□□ 2.37
MSH4O15457 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
MSH4O15457 ST7-202ENST00000323984 2142 ntTSL 5 BASIC29.82■■■□□ 2.36
MSH4O15457 ST7-207ENST00000393449 2127 ntTSL 5 BASIC29.82■■■□□ 2.36
MSH4O15457 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.82■■■□□ 2.36
MSH4O15457 AC108673.1-201ENST00000510422 1159 ntBASIC29.82■■■□□ 2.36
MSH4O15457 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.81■■■□□ 2.36
MSH4O15457 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
MSH4O15457 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH4O15457 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.8■■■□□ 2.36
MSH4O15457 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH4O15457 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
MSH4O15457 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
MSH4O15457 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
MSH4O15457 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
MSH4O15457 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.76■■■□□ 2.35
MSH4O15457 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
MSH4O15457 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
MSH4O15457 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
MSH4O15457 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
MSH4O15457 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.74■■■□□ 2.35
MSH4O15457 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.73■■■□□ 2.35
MSH4O15457 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
MSH4O15457 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
MSH4O15457 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.71■■■□□ 2.35
MSH4O15457 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.7■■■□□ 2.35
MSH4O15457 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH4O15457 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.69■■■□□ 2.34
MSH4O15457 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.68■■■□□ 2.34
MSH4O15457 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
MSH4O15457 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.67■■■□□ 2.34
MSH4O15457 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH4O15457 ST7-AS1-201ENST00000456775 1889 ntBASIC29.66■■■□□ 2.34
MSH4O15457 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
MSH4O15457 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH4O15457 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
MSH4O15457 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
MSH4O15457 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
MSH4O15457 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.64■■■□□ 2.34
MSH4O15457 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
MSH4O15457 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
MSH4O15457 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH4O15457 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.62■■■□□ 2.33
MSH4O15457 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH4O15457 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.62■■■□□ 2.33
MSH4O15457 AC021231.2-201ENST00000594613 730 ntBASIC29.62■■■□□ 2.33
MSH4O15457 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH4O15457 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.61■■■□□ 2.33
MSH4O15457 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.61■■■□□ 2.33
MSH4O15457 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.6■■■□□ 2.33
MSH4O15457 ABHD17AP4-201ENST00000411545 909 ntBASIC29.6■■■□□ 2.33
MSH4O15457 DUX4L29-201ENST00000425409 679 ntBASIC29.6■■■□□ 2.33
MSH4O15457 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.6■■■□□ 2.33
MSH4O15457 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH4O15457 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH4O15457 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH4O15457 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH4O15457 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH4O15457 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
MSH4O15457 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
MSH4O15457 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH4O15457 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
MSH4O15457 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH4O15457 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH4O15457 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH4O15457 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH4O15457 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.52■■■□□ 2.32
MSH4O15457 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.51■■■□□ 2.31
MSH4O15457 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.5■■■□□ 2.31
MSH4O15457 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.5■■■□□ 2.31
MSH4O15457 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH4O15457 ABCB10P1-201ENST00000614297 2181 ntBASIC29.49■■■□□ 2.31
MSH4O15457 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.49■■■□□ 2.31
MSH4O15457 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH4O15457 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
MSH4O15457 ZNRF2P2-203ENST00000454624 420 ntBASIC29.48■■■□□ 2.31
MSH4O15457 AC127502.1-201ENST00000399971 1502 ntBASIC29.48■■■□□ 2.31
MSH4O15457 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
MSH4O15457 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH4O15457 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH4O15457 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH4O15457 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.46■■■□□ 2.31
MSH4O15457 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
MSH4O15457 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.46■■■□□ 2.31
MSH4O15457 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.31
MSH4O15457 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.45■■■□□ 2.31
MSH4O15457 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
MSH4O15457 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
MSH4O15457 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.45■■■□□ 2.31
MSH4O15457 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH4O15457 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.44■■■□□ 2.3
MSH4O15457 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
MSH4O15457 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH4O15457 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.42■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms