Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH4O15457 AC010864.1-201ENST00000609407 1511 ntBASIC29.83■■■□□ 2.37
MSH4O15457 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.83■■■□□ 2.37
MSH4O15457 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
MSH4O15457 ST7-202ENST00000323984 2142 ntTSL 5 BASIC29.82■■■□□ 2.36
MSH4O15457 ST7-207ENST00000393449 2127 ntTSL 5 BASIC29.82■■■□□ 2.36
MSH4O15457 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.82■■■□□ 2.36
MSH4O15457 AC108673.1-201ENST00000510422 1159 ntBASIC29.82■■■□□ 2.36
MSH4O15457 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.81■■■□□ 2.36
MSH4O15457 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
MSH4O15457 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH4O15457 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.8■■■□□ 2.36
MSH4O15457 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH4O15457 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
MSH4O15457 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
MSH4O15457 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
MSH4O15457 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
MSH4O15457 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.76■■■□□ 2.35
MSH4O15457 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
MSH4O15457 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
MSH4O15457 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
MSH4O15457 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
MSH4O15457 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.74■■■□□ 2.35
MSH4O15457 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.73■■■□□ 2.35
MSH4O15457 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
MSH4O15457 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
MSH4O15457 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.71■■■□□ 2.35
MSH4O15457 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.7■■■□□ 2.35
MSH4O15457 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH4O15457 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.69■■■□□ 2.34
MSH4O15457 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.68■■■□□ 2.34
MSH4O15457 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
MSH4O15457 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.67■■■□□ 2.34
MSH4O15457 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
MSH4O15457 ST7-AS1-201ENST00000456775 1889 ntBASIC29.66■■■□□ 2.34
MSH4O15457 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
MSH4O15457 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH4O15457 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
MSH4O15457 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
MSH4O15457 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
MSH4O15457 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.64■■■□□ 2.34
MSH4O15457 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
MSH4O15457 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
MSH4O15457 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH4O15457 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.62■■■□□ 2.33
MSH4O15457 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH4O15457 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.62■■■□□ 2.33
MSH4O15457 AC021231.2-201ENST00000594613 730 ntBASIC29.62■■■□□ 2.33
MSH4O15457 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH4O15457 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.61■■■□□ 2.33
MSH4O15457 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.61■■■□□ 2.33
MSH4O15457 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.6■■■□□ 2.33
MSH4O15457 ABHD17AP4-201ENST00000411545 909 ntBASIC29.6■■■□□ 2.33
MSH4O15457 DUX4L29-201ENST00000425409 679 ntBASIC29.6■■■□□ 2.33
MSH4O15457 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.6■■■□□ 2.33
MSH4O15457 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH4O15457 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH4O15457 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH4O15457 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH4O15457 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH4O15457 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
MSH4O15457 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
MSH4O15457 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH4O15457 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
MSH4O15457 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH4O15457 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH4O15457 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH4O15457 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH4O15457 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
MSH4O15457 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.52■■■□□ 2.32
MSH4O15457 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.51■■■□□ 2.31
MSH4O15457 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.5■■■□□ 2.31
MSH4O15457 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.5■■■□□ 2.31
MSH4O15457 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH4O15457 ABCB10P1-201ENST00000614297 2181 ntBASIC29.49■■■□□ 2.31
MSH4O15457 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.49■■■□□ 2.31
MSH4O15457 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MSH4O15457 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
MSH4O15457 ZNRF2P2-203ENST00000454624 420 ntBASIC29.48■■■□□ 2.31
MSH4O15457 AC127502.1-201ENST00000399971 1502 ntBASIC29.48■■■□□ 2.31
MSH4O15457 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
MSH4O15457 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH4O15457 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH4O15457 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MSH4O15457 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.46■■■□□ 2.31
MSH4O15457 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
MSH4O15457 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.46■■■□□ 2.31
MSH4O15457 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.31
MSH4O15457 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.45■■■□□ 2.31
MSH4O15457 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
MSH4O15457 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
MSH4O15457 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.45■■■□□ 2.31
MSH4O15457 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH4O15457 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.44■■■□□ 2.3
MSH4O15457 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
MSH4O15457 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH4O15457 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.42■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms