Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.51■■□□□ 1.51
HMGN4O00479 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
HMGN4O00479 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HMGN4O00479 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC24.5■■□□□ 1.51
HMGN4O00479 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HMGN4O00479 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
HMGN4O00479 EBPL-202ENST00000378268 680 ntTSL 3 BASIC24.49■■□□□ 1.51
HMGN4O00479 AC097358.2-201ENST00000607541 1159 ntBASIC24.49■■□□□ 1.51
HMGN4O00479 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HMGN4O00479 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
HMGN4O00479 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
HMGN4O00479 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.48■■□□□ 1.51
HMGN4O00479 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
HMGN4O00479 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
HMGN4O00479 AL139393.2-201ENST00000608721 2025 ntBASIC24.48■■□□□ 1.51
HMGN4O00479 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
HMGN4O00479 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGN4O00479 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGN4O00479 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
HMGN4O00479 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGN4O00479 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGN4O00479 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
HMGN4O00479 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.45■■□□□ 1.51
HMGN4O00479 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGN4O00479 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGN4O00479 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGN4O00479 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGN4O00479 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGN4O00479 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGN4O00479 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGN4O00479 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGN4O00479 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
HMGN4O00479 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGN4O00479 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGN4O00479 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
HMGN4O00479 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGN4O00479 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGN4O00479 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
HMGN4O00479 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
HMGN4O00479 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
HMGN4O00479 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGN4O00479 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGN4O00479 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.38■■□□□ 1.49
HMGN4O00479 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGN4O00479 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGN4O00479 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGN4O00479 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
HMGN4O00479 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGN4O00479 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGN4O00479 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGN4O00479 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGN4O00479 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGN4O00479 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
HMGN4O00479 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGN4O00479 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
HMGN4O00479 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGN4O00479 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGN4O00479 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGN4O00479 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGN4O00479 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGN4O00479 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
HMGN4O00479 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.3■■□□□ 1.48
HMGN4O00479 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.29■■□□□ 1.48
HMGN4O00479 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGN4O00479 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
HMGN4O00479 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.28■■□□□ 1.48
HMGN4O00479 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
HMGN4O00479 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.28■■□□□ 1.48
HMGN4O00479 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.28■■□□□ 1.48
HMGN4O00479 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
HMGN4O00479 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
HMGN4O00479 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGN4O00479 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.27■■□□□ 1.48
HMGN4O00479 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.27■■□□□ 1.48
HMGN4O00479 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGN4O00479 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGN4O00479 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
HMGN4O00479 AC142086.6-201ENST00000621154 1765 ntBASIC24.26■■□□□ 1.47
HMGN4O00479 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGN4O00479 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.26■■□□□ 1.47
HMGN4O00479 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGN4O00479 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGN4O00479 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGN4O00479 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
HMGN4O00479 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
HMGN4O00479 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGN4O00479 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGN4O00479 DRD5P2-201ENST00000421395 2012 ntBASIC24.23■■□□□ 1.47
HMGN4O00479 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGN4O00479 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
HMGN4O00479 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.22■■□□□ 1.47
HMGN4O00479 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
HMGN4O00479 MIR762-201ENST00000390236 83 ntBASIC24.22■■□□□ 1.47
HMGN4O00479 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGN4O00479 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGN4O00479 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGN4O00479 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
HMGN4O00479 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.21■■□□□ 1.47
HMGN4O00479 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.47
HMGN4O00479 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms