Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV4A0A0B4J268 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TRAV4A0A0B4J268 CAHM-201ENST00000604200 896 ntBASIC18.78■□□□□ 0.6
TRAV4A0A0B4J268 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV4A0A0B4J268 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV4A0A0B4J268 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAV4A0A0B4J268 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV4A0A0B4J268 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
TRAV4A0A0B4J268 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV4A0A0B4J268 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV4A0A0B4J268 AC010864.1-201ENST00000609407 1511 ntBASIC18.74■□□□□ 0.59
TRAV4A0A0B4J268 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV4A0A0B4J268 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV4A0A0B4J268 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRAV4A0A0B4J268 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV4A0A0B4J268 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRAV4A0A0B4J268 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAV4A0A0B4J268 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV4A0A0B4J268 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV4A0A0B4J268 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV4A0A0B4J268 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
TRAV4A0A0B4J268 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV4A0A0B4J268 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TRAV4A0A0B4J268 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV4A0A0B4J268 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV4A0A0B4J268 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRAV4A0A0B4J268 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV4A0A0B4J268 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV4A0A0B4J268 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC18.7■□□□□ 0.58
TRAV4A0A0B4J268 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV4A0A0B4J268 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV4A0A0B4J268 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC18.68■□□□□ 0.58
TRAV4A0A0B4J268 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC18.68■□□□□ 0.58
TRAV4A0A0B4J268 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAV4A0A0B4J268 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV4A0A0B4J268 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV4A0A0B4J268 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV4A0A0B4J268 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TRAV4A0A0B4J268 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV4A0A0B4J268 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV4A0A0B4J268 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV4A0A0B4J268 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRAV4A0A0B4J268 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV4A0A0B4J268 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV4A0A0B4J268 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV4A0A0B4J268 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV4A0A0B4J268 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV4A0A0B4J268 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV4A0A0B4J268 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV4A0A0B4J268 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV4A0A0B4J268 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV4A0A0B4J268 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRAV4A0A0B4J268 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
TRAV4A0A0B4J268 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV4A0A0B4J268 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV4A0A0B4J268 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV4A0A0B4J268 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV4A0A0B4J268 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRAV4A0A0B4J268 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV4A0A0B4J268 MIR762-201ENST00000390236 83 ntBASIC18.59■□□□□ 0.57
TRAV4A0A0B4J268 CHML-205ENST00000638160 705 ntTSL 3 BASIC18.59■□□□□ 0.57
TRAV4A0A0B4J268 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAV4A0A0B4J268 AL139393.2-201ENST00000608721 2025 ntBASIC18.59■□□□□ 0.57
TRAV4A0A0B4J268 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
TRAV4A0A0B4J268 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAV4A0A0B4J268 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC18.58■□□□□ 0.56
TRAV4A0A0B4J268 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV4A0A0B4J268 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TRAV4A0A0B4J268 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV4A0A0B4J268 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV4A0A0B4J268 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV4A0A0B4J268 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAV4A0A0B4J268 AC135731.1-201ENST00000569415 2548 ntBASIC18.57■□□□□ 0.56
TRAV4A0A0B4J268 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV4A0A0B4J268 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV4A0A0B4J268 SHF-206ENST00000560471 2499 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV4A0A0B4J268 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAV4A0A0B4J268 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV4A0A0B4J268 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TRAV4A0A0B4J268 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms