Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 KRASP1-201ENST00000407852 552 ntBASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UPF3AQ9H1J1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 MIR1224-201ENST00000408193 85 ntBASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 AC113410.3-201ENST00000623366 203 ntBASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UPF3AQ9H1J1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 RER1-204ENST00000378518 522 ntTSL 3 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 RARRES2P10-201ENST00000564312 460 ntBASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
UPF3AQ9H1J1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 MIR4785-201ENST00000585005 73 ntBASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
UPF3AQ9H1J1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 AL390719.1-204ENST00000412397 1219 ntBASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
UPF3AQ9H1J1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.83■■□□□ 1.25
UPF3AQ9H1J1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
UPF3AQ9H1J1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.83■■□□□ 1.25
UPF3AQ9H1J1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms