Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
UPK3BQ9BT76 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 MIPEPP3-201ENST00000412105 444 ntBASIC14.19□□□□□ -0.14
UPK3BQ9BT76 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 AC093787.1-201ENST00000450396 207 ntBASIC14.19□□□□□ -0.14
UPK3BQ9BT76 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 ISCU-212ENST00000547005 795 ntTSL 3 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 AL138781.1-201ENST00000566567 1274 ntBASIC14.19□□□□□ -0.14
UPK3BQ9BT76 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
UPK3BQ9BT76 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 AC010980.2-201ENST00000587099 1412 ntBASIC14.18□□□□□ -0.14
UPK3BQ9BT76 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 AC007322.3-201ENST00000426526 701 ntBASIC14.18□□□□□ -0.14
UPK3BQ9BT76 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
UPK3BQ9BT76 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 PHB2-213ENST00000546111 858 ntTSL 2 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
UPK3BQ9BT76 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 AC244015.2-201ENST00000616358 1861 ntBASIC14.16□□□□□ -0.14
UPK3BQ9BT76 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
UPK3BQ9BT76 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms