Protein–RNA interactions for Protein: Q96RF0

SNX18, Sorting nexin-18, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX18Q96RF0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX18Q96RF0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.56■□□□□ 0.56
SNX18Q96RF0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX18Q96RF0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.56■□□□□ 0.56
SNX18Q96RF0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX18Q96RF0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SNX18Q96RF0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 POU5F1P4-201ENST00000413175 1085 ntBASIC18.55■□□□□ 0.56
SNX18Q96RF0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 YBX1P1-201ENST00000445822 960 ntBASIC18.55■□□□□ 0.56
SNX18Q96RF0 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 MIR6084-201ENST00000622012 110 ntBASIC18.55■□□□□ 0.56
SNX18Q96RF0 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX18Q96RF0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SNX18Q96RF0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 AC008175.2-201ENST00000612840 297 ntBASIC18.54■□□□□ 0.56
SNX18Q96RF0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SNX18Q96RF0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SNX18Q96RF0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 KRT87P-202ENST00000534226 1464 ntBASIC18.53■□□□□ 0.56
SNX18Q96RF0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 AC018445.3-201ENST00000624177 1945 ntBASIC18.53■□□□□ 0.56
SNX18Q96RF0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 AC034268.1-201ENST00000441047 882 ntBASIC18.53■□□□□ 0.56
SNX18Q96RF0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SNX18Q96RF0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SNX18Q96RF0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SNX18Q96RF0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX18Q96RF0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX18Q96RF0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX18Q96RF0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SNX18Q96RF0 AC027612.3-201ENST00000413684 1047 ntBASIC18.52■□□□□ 0.56
SNX18Q96RF0 AC079140.4-201ENST00000507448 529 ntBASIC18.52■□□□□ 0.56
SNX18Q96RF0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.52■□□□□ 0.56
SNX18Q96RF0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.52■□□□□ 0.56
SNX18Q96RF0 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SNX18Q96RF0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
SNX18Q96RF0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
SNX18Q96RF0 GABARAPL3-202ENST00000624044 1851 ntBASIC18.52■□□□□ 0.55
SNX18Q96RF0 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.55
SNX18Q96RF0 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.51■□□□□ 0.55
SNX18Q96RF0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX18Q96RF0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX18Q96RF0 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SNX18Q96RF0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SNX18Q96RF0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SNX18Q96RF0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms