Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 AC087633.2-202ENST00000565166 1439 ntBASIC20.31■□□□□ 0.84
VPS35Q96QK1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS35Q96QK1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 AC006128.1-201ENST00000624704 1661 ntBASIC20.3■□□□□ 0.84
VPS35Q96QK1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 PGM5P4-201ENST00000421970 445 ntBASIC20.3■□□□□ 0.84
VPS35Q96QK1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VPS35Q96QK1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS35Q96QK1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 MIPEPP3-201ENST00000412105 444 ntBASIC20.29■□□□□ 0.84
VPS35Q96QK1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 AL137060.1-201ENST00000618151 2648 ntBASIC20.29■□□□□ 0.84
VPS35Q96QK1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VPS35Q96QK1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS35Q96QK1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS35Q96QK1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS35Q96QK1 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS35Q96QK1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.28■□□□□ 0.84
VPS35Q96QK1 AC142086.2-201ENST00000569753 217 ntBASIC20.28■□□□□ 0.84
VPS35Q96QK1 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS35Q96QK1 MIR2861-201ENST00000636310 90 ntBASIC20.28■□□□□ 0.84
VPS35Q96QK1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS35Q96QK1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS35Q96QK1 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS35Q96QK1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS35Q96QK1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms