Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN4P29074 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.47■□□□□ 0.87
PTPN4P29074 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.47■□□□□ 0.87
PTPN4P29074 AC004854.2-201ENST00000608450 1441 ntBASIC20.47■□□□□ 0.87
PTPN4P29074 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
PTPN4P29074 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.47■□□□□ 0.87
PTPN4P29074 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PTPN4P29074 AC079089.2-201ENST00000531211 1277 ntBASIC20.47■□□□□ 0.87
PTPN4P29074 AC080038.1-201ENST00000611274 1154 ntBASIC20.47■□□□□ 0.87
PTPN4P29074 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.47■□□□□ 0.87
PTPN4P29074 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN4P29074 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.46■□□□□ 0.87
PTPN4P29074 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PTPN4P29074 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PTPN4P29074 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.46■□□□□ 0.87
PTPN4P29074 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.46■□□□□ 0.87
PTPN4P29074 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.46■□□□□ 0.87
PTPN4P29074 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.46■□□□□ 0.87
PTPN4P29074 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN4P29074 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
PTPN4P29074 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN4P29074 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
PTPN4P29074 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN4P29074 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.45■□□□□ 0.86
PTPN4P29074 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.45■□□□□ 0.86
PTPN4P29074 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.45■□□□□ 0.86
PTPN4P29074 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 KRT19P1-201ENST00000405746 1186 ntBASIC20.45■□□□□ 0.86
PTPN4P29074 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN4P29074 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.45■□□□□ 0.86
PTPN4P29074 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.45■□□□□ 0.86
PTPN4P29074 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.45■□□□□ 0.86
PTPN4P29074 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.45■□□□□ 0.86
PTPN4P29074 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN4P29074 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN4P29074 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN4P29074 SMG8-203ENST00000578922 2178 ntBASIC20.45■□□□□ 0.86
PTPN4P29074 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.45■□□□□ 0.86
PTPN4P29074 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.45■□□□□ 0.86
PTPN4P29074 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PTPN4P29074 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.44■□□□□ 0.86
PTPN4P29074 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
PTPN4P29074 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.44■□□□□ 0.86
PTPN4P29074 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.44■□□□□ 0.86
PTPN4P29074 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PTPN4P29074 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 PLK5-205ENST00000642079 1969 ntBASIC20.44■□□□□ 0.86
PTPN4P29074 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.44■□□□□ 0.86
PTPN4P29074 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.44■□□□□ 0.86
PTPN4P29074 AC027702.1-201ENST00000563810 1770 ntBASIC20.44■□□□□ 0.86
PTPN4P29074 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN4P29074 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PTPN4P29074 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PTPN4P29074 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.43■□□□□ 0.86
PTPN4P29074 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.43■□□□□ 0.86
PTPN4P29074 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PTPN4P29074 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
PTPN4P29074 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
PTPN4P29074 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN4P29074 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.43■□□□□ 0.86
PTPN4P29074 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms