Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.54■□□□□ 0.88
SHOX2O60902 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHOX2O60902 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHOX2O60902 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 AP006587.3-201ENST00000525742 1516 ntBASIC20.54■□□□□ 0.88
SHOX2O60902 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.54■□□□□ 0.88
SHOX2O60902 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHOX2O60902 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SHOX2O60902 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SHOX2O60902 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHOX2O60902 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SHOX2O60902 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.54■□□□□ 0.88
SHOX2O60902 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
SHOX2O60902 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHOX2O60902 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SHOX2O60902 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
SHOX2O60902 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.53■□□□□ 0.88
SHOX2O60902 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.53■□□□□ 0.88
SHOX2O60902 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.53■□□□□ 0.88
SHOX2O60902 Z92544.1-202ENST00000571933 1220 ntBASIC20.53■□□□□ 0.88
SHOX2O60902 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
SHOX2O60902 AC011484.1-201ENST00000377652 1995 ntBASIC20.53■□□□□ 0.88
SHOX2O60902 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.53■□□□□ 0.88
SHOX2O60902 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.53■□□□□ 0.88
SHOX2O60902 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SHOX2O60902 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHOX2O60902 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHOX2O60902 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHOX2O60902 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHOX2O60902 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SHOX2O60902 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.52■□□□□ 0.88
SHOX2O60902 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.52■□□□□ 0.88
SHOX2O60902 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.52■□□□□ 0.88
SHOX2O60902 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHOX2O60902 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHOX2O60902 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHOX2O60902 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SHOX2O60902 BX005040.4-201ENST00000637145 1518 ntBASIC20.52■□□□□ 0.87
SHOX2O60902 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
SHOX2O60902 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHOX2O60902 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHOX2O60902 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHOX2O60902 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHOX2O60902 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.51■□□□□ 0.87
SHOX2O60902 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SHOX2O60902 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHOX2O60902 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHOX2O60902 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.51■□□□□ 0.87
SHOX2O60902 YBX1P4-201ENST00000392794 808 ntBASIC20.51■□□□□ 0.87
SHOX2O60902 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHOX2O60902 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SHOX2O60902 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.5■□□□□ 0.87
SHOX2O60902 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.5■□□□□ 0.87
SHOX2O60902 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHOX2O60902 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHOX2O60902 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.5■□□□□ 0.87
SHOX2O60902 AL451085.2-201ENST00000605085 799 ntBASIC20.5■□□□□ 0.87
SHOX2O60902 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHOX2O60902 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.5■□□□□ 0.87
SHOX2O60902 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHOX2O60902 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHOX2O60902 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SHOX2O60902 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHOX2O60902 AC079598.2-202ENST00000546624 1451 ntBASIC20.5■□□□□ 0.87
SHOX2O60902 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.49■□□□□ 0.87
SHOX2O60902 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.49■□□□□ 0.87
SHOX2O60902 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.49■□□□□ 0.87
SHOX2O60902 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.49■□□□□ 0.87
SHOX2O60902 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SHOX2O60902 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms