Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB3O15347 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGB3O15347 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HMGB3O15347 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
HMGB3O15347 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB3O15347 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB3O15347 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HMGB3O15347 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB3O15347 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB3O15347 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 AC103724.3-201ENST00000564481 992 ntBASIC16.46■□□□□ 0.23
HMGB3O15347 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB3O15347 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB3O15347 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB3O15347 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
HMGB3O15347 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
HMGB3O15347 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
HMGB3O15347 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB3O15347 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 TK2-216ENST00000564917 1156 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGB3O15347 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
HMGB3O15347 HSD17B1P1-201ENST00000590052 955 ntBASIC16.45■□□□□ 0.22
HMGB3O15347 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 AC003102.1-202ENST00000563394 1796 ntBASIC16.45■□□□□ 0.22
HMGB3O15347 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HMGB3O15347 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HMGB3O15347 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB3O15347 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC16.45■□□□□ 0.22
HMGB3O15347 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB3O15347 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB3O15347 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB3O15347 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGB3O15347 AC103834.1-201ENST00000520383 144 ntBASIC16.44■□□□□ 0.22
HMGB3O15347 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB3O15347 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB3O15347 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGB3O15347 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HMGB3O15347 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HMGB3O15347 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGB3O15347 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
HMGB3O15347 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB3O15347 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms