Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 PGM5P4-201ENST00000421970 445 ntBASIC35.86■■■■□ 3.33
CCDC88BA6NC98 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
CCDC88BA6NC98 MIR4785-201ENST00000585005 73 ntBASIC35.86■■■■□ 3.33
CCDC88BA6NC98 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
CCDC88BA6NC98 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC35.85■■■■□ 3.33
CCDC88BA6NC98 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
CCDC88BA6NC98 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC35.85■■■■□ 3.33
CCDC88BA6NC98 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC35.85■■■■□ 3.33
CCDC88BA6NC98 AC097493.4-201ENST00000641197 219 ntBASIC35.85■■■■□ 3.33
CCDC88BA6NC98 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
CCDC88BA6NC98 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC35.84■■■■□ 3.33
CCDC88BA6NC98 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC35.84■■■■□ 3.33
CCDC88BA6NC98 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC35.84■■■■□ 3.33
CCDC88BA6NC98 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
CCDC88BA6NC98 KRT17P2-201ENST00000300992 1314 ntBASIC35.83■■■■□ 3.33
CCDC88BA6NC98 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 KRT18P21-201ENST00000515767 1272 ntBASIC35.83■■■■□ 3.33
CCDC88BA6NC98 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC35.83■■■■□ 3.33
CCDC88BA6NC98 AL135905.2-201ENST00000584934 1404 ntBASIC35.82■■■■□ 3.33
CCDC88BA6NC98 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.33
CCDC88BA6NC98 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.33
CCDC88BA6NC98 RCN1P1-201ENST00000400413 996 ntBASIC35.82■■■■□ 3.32
CCDC88BA6NC98 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC35.82■■■■□ 3.32
CCDC88BA6NC98 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC35.82■■■■□ 3.32
CCDC88BA6NC98 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC35.82■■■■□ 3.32
CCDC88BA6NC98 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC35.82■■■■□ 3.32
CCDC88BA6NC98 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC35.82■■■■□ 3.32
CCDC88BA6NC98 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 GRAP-204ENST00000573099 846 ntTSL 3 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 Six3os1_6.1-201ENST00000620790 196 ntBASIC35.81■■■■□ 3.32
CCDC88BA6NC98 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC35.81■■■■□ 3.32
CCDC88BA6NC98 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 GOLGA2P6-201ENST00000340929 2049 ntBASIC35.8■■■■□ 3.32
CCDC88BA6NC98 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 PRKY-204ENST00000533551 1019 ntBASIC35.8■■■■□ 3.32
CCDC88BA6NC98 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC35.8■■■■□ 3.32
CCDC88BA6NC98 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 AC242852.2-201ENST00000615738 1807 ntBASIC35.79■■■■□ 3.32
CCDC88BA6NC98 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
CCDC88BA6NC98 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CCDC88BA6NC98 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CCDC88BA6NC98 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CCDC88BA6NC98 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC35.78■■■■□ 3.32
CCDC88BA6NC98 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
CCDC88BA6NC98 TERT-206ENST00000508104 2486 ntTSL 5 BASIC35.78■■■■□ 3.32
CCDC88BA6NC98 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC35.77■■■■□ 3.32
CCDC88BA6NC98 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
CCDC88BA6NC98 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC35.76■■■■□ 3.32
CCDC88BA6NC98 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC35.76■■■■□ 3.32
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms