Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLN6Q9NWW5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 SMUG1P1-201ENST00000590640 811 ntBASIC18.66■□□□□ 0.58
CLN6Q9NWW5 MIR4466-201ENST00000606121 54 ntBASIC18.66■□□□□ 0.58
CLN6Q9NWW5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 AC011484.1-201ENST00000377652 1995 ntBASIC18.66■□□□□ 0.58
CLN6Q9NWW5 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLN6Q9NWW5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLN6Q9NWW5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CLN6Q9NWW5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLN6Q9NWW5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.64■□□□□ 0.58
CLN6Q9NWW5 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.58
CLN6Q9NWW5 AC092720.2-201ENST00000602388 1665 ntBASIC18.64■□□□□ 0.57
CLN6Q9NWW5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 BX005040.4-201ENST00000637145 1518 ntBASIC18.64■□□□□ 0.57
CLN6Q9NWW5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLN6Q9NWW5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 AL356441.2-201ENST00000443009 864 ntBASIC18.63■□□□□ 0.57
CLN6Q9NWW5 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.63■□□□□ 0.57
CLN6Q9NWW5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms