Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP1AQ9HD42 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
CHMP1AQ9HD42 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.58■□□□□ 0.41
CHMP1AQ9HD42 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 AC135279.3-201ENST00000610945 1311 ntBASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 AC008764.7-201ENST00000593779 1081 ntBASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP1AQ9HD42 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 AC131212.1-201ENST00000613771 668 ntBASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 AC105233.4-201ENST00000642045 216 ntBASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP1AQ9HD42 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 AC133561.4-201ENST00000566112 224 ntBASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP1AQ9HD42 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 AFG3L1P-217ENST00000557444 2447 ntBASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CHMP1AQ9HD42 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 TSPY26P-201ENST00000476365 1326 ntBASIC17.54■□□□□ 0.4
CHMP1AQ9HD42 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms