Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.3■■□□□ 1.16
CDT1Q9H211 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC22.3■■□□□ 1.16
CDT1Q9H211 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
CDT1Q9H211 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.3■■□□□ 1.16
CDT1Q9H211 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 AC027702.1-201ENST00000563810 1770 ntBASIC22.3■■□□□ 1.16
CDT1Q9H211 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CDT1Q9H211 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDT1Q9H211 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDT1Q9H211 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CDT1Q9H211 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
CDT1Q9H211 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC22.29■■□□□ 1.16
CDT1Q9H211 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22.29■■□□□ 1.16
CDT1Q9H211 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDT1Q9H211 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDT1Q9H211 PLK5-205ENST00000642079 1969 ntBASIC22.29■■□□□ 1.16
CDT1Q9H211 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CDT1Q9H211 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 NME6-213ENST00000451657 871 ntTSL 2 BASIC22.28■■□□□ 1.16
CDT1Q9H211 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.28■■□□□ 1.16
CDT1Q9H211 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC22.28■■□□□ 1.16
CDT1Q9H211 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC22.28■■□□□ 1.16
CDT1Q9H211 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.28■■□□□ 1.16
CDT1Q9H211 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDT1Q9H211 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.27■■□□□ 1.16
CDT1Q9H211 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.27■■□□□ 1.16
CDT1Q9H211 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDT1Q9H211 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CDT1Q9H211 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDT1Q9H211 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDT1Q9H211 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDT1Q9H211 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.27■■□□□ 1.16
CDT1Q9H211 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.27■■□□□ 1.16
CDT1Q9H211 AC005229.4-201ENST00000610085 2198 ntBASIC22.27■■□□□ 1.16
CDT1Q9H211 AL356652.1-201ENST00000615962 565 ntBASIC22.27■■□□□ 1.16
CDT1Q9H211 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDT1Q9H211 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CDT1Q9H211 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CDT1Q9H211 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.27■■□□□ 1.15
CDT1Q9H211 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CDT1Q9H211 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDT1Q9H211 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC22.26■■□□□ 1.15
CDT1Q9H211 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.26■■□□□ 1.15
CDT1Q9H211 PGM5P4-201ENST00000421970 445 ntBASIC22.26■■□□□ 1.15
CDT1Q9H211 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.26■■□□□ 1.15
CDT1Q9H211 RNA5SP413-201ENST00000516373 109 ntBASIC22.26■■□□□ 1.15
CDT1Q9H211 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDT1Q9H211 MIR4651-201ENST00000582622 73 ntBASIC22.26■■□□□ 1.15
CDT1Q9H211 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC22.26■■□□□ 1.15
CDT1Q9H211 AC007375.3-201ENST00000600936 2314 ntBASIC22.26■■□□□ 1.15
CDT1Q9H211 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDT1Q9H211 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.26■■□□□ 1.15
CDT1Q9H211 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDT1Q9H211 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDT1Q9H211 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.25■■□□□ 1.15
CDT1Q9H211 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.25■■□□□ 1.15
CDT1Q9H211 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC22.25■■□□□ 1.15
CDT1Q9H211 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC22.25■■□□□ 1.15
CDT1Q9H211 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.25■■□□□ 1.15
CDT1Q9H211 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC22.25■■□□□ 1.15
CDT1Q9H211 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.25■■□□□ 1.15
CDT1Q9H211 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDT1Q9H211 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CDT1Q9H211 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDT1Q9H211 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CDT1Q9H211 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CDT1Q9H211 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CDT1Q9H211 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDT1Q9H211 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.24■■□□□ 1.15
CDT1Q9H211 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CDT1Q9H211 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDT1Q9H211 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.24■■□□□ 1.15
CDT1Q9H211 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
CDT1Q9H211 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.23■■□□□ 1.15
CDT1Q9H211 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms