Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.34■□□□□ 0.69
COL21A1Q96P44 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 AC061975.6-201ENST00000579045 1553 ntBASIC19.33■□□□□ 0.69
COL21A1Q96P44 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL21A1Q96P44 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.33■□□□□ 0.69
COL21A1Q96P44 AC016769.1-201ENST00000409132 1010 ntBASIC19.33■□□□□ 0.68
COL21A1Q96P44 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.33■□□□□ 0.68
COL21A1Q96P44 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.33■□□□□ 0.68
COL21A1Q96P44 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
COL21A1Q96P44 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL21A1Q96P44 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL21A1Q96P44 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL21A1Q96P44 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.32■□□□□ 0.68
COL21A1Q96P44 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
COL21A1Q96P44 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.31■□□□□ 0.68
COL21A1Q96P44 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL21A1Q96P44 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL21A1Q96P44 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.31■□□□□ 0.68
COL21A1Q96P44 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.31■□□□□ 0.68
COL21A1Q96P44 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.31■□□□□ 0.68
COL21A1Q96P44 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL21A1Q96P44 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL21A1Q96P44 AC007952.6-201ENST00000573168 2673 ntBASIC19.3■□□□□ 0.68
COL21A1Q96P44 AC003957.1-201ENST00000625108 2673 ntBASIC19.3■□□□□ 0.68
COL21A1Q96P44 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 KRT18P11-201ENST00000435214 1283 ntBASIC19.3■□□□□ 0.68
COL21A1Q96P44 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 SLC7A5P2-201ENST00000553010 536 ntBASIC19.3■□□□□ 0.68
COL21A1Q96P44 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 UBE2DNL-204ENST00000602536 740 ntBASIC19.3■□□□□ 0.68
COL21A1Q96P44 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL21A1Q96P44 KRT16P2-201ENST00000414673 1423 ntBASIC19.3■□□□□ 0.68
COL21A1Q96P44 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL21A1Q96P44 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL21A1Q96P44 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL21A1Q96P44 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms