Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CFAP54Q96N23 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CFAP54Q96N23 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CFAP54Q96N23 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.31■□□□□ 0.84
CFAP54Q96N23 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CFAP54Q96N23 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.31■□□□□ 0.84
CFAP54Q96N23 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CFAP54Q96N23 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CFAP54Q96N23 PVRIG2P-201ENST00000435460 978 ntBASIC20.3■□□□□ 0.84
CFAP54Q96N23 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CFAP54Q96N23 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CFAP54Q96N23 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.3■□□□□ 0.84
CFAP54Q96N23 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.3■□□□□ 0.84
CFAP54Q96N23 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.3■□□□□ 0.84
CFAP54Q96N23 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.3■□□□□ 0.84
CFAP54Q96N23 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CFAP54Q96N23 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CFAP54Q96N23 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.3■□□□□ 0.84
CFAP54Q96N23 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CFAP54Q96N23 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CFAP54Q96N23 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 AC110285.5-201ENST00000611501 352 ntBASIC20.29■□□□□ 0.84
CFAP54Q96N23 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CFAP54Q96N23 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CFAP54Q96N23 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CFAP54Q96N23 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.29■□□□□ 0.84
CFAP54Q96N23 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CFAP54Q96N23 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 AC092068.2-201ENST00000590491 1708 ntBASIC20.28■□□□□ 0.84
CFAP54Q96N23 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CFAP54Q96N23 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CFAP54Q96N23 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CFAP54Q96N23 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CFAP54Q96N23 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CFAP54Q96N23 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CFAP54Q96N23 ANOS2P-203ENST00000472227 1816 ntBASIC20.27■□□□□ 0.84
CFAP54Q96N23 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CFAP54Q96N23 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.27■□□□□ 0.84
CFAP54Q96N23 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.27■□□□□ 0.84
CFAP54Q96N23 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.27■□□□□ 0.84
CFAP54Q96N23 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CFAP54Q96N23 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CFAP54Q96N23 HCG4P8-203ENST00000443049 980 ntBASIC20.27■□□□□ 0.84
CFAP54Q96N23 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CFAP54Q96N23 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CFAP54Q96N23 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.26■□□□□ 0.83
CFAP54Q96N23 KRT18P16-201ENST00000510337 1294 ntBASIC20.26■□□□□ 0.83
CFAP54Q96N23 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.26■□□□□ 0.83
CFAP54Q96N23 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CFAP54Q96N23 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.26■□□□□ 0.83
CFAP54Q96N23 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CFAP54Q96N23 AL390955.1-201ENST00000428694 934 ntBASIC20.26■□□□□ 0.83
CFAP54Q96N23 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CFAP54Q96N23 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CFAP54Q96N23 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CFAP54Q96N23 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 AC022616.7-201ENST00000525383 220 ntBASIC20.25■□□□□ 0.83
CFAP54Q96N23 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 AC243732.1-201ENST00000612648 864 ntBASIC20.25■□□□□ 0.83
CFAP54Q96N23 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 AC061975.6-201ENST00000579045 1553 ntBASIC20.25■□□□□ 0.83
CFAP54Q96N23 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.25■□□□□ 0.83
CFAP54Q96N23 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CFAP54Q96N23 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 AL031133.1-201ENST00000406807 723 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms