Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 AC026471.6-201ENST00000622954 1905 ntBASIC20.98■□□□□ 0.95
SKA1Q96BD8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.98■□□□□ 0.95
SKA1Q96BD8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA1Q96BD8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 MKRN4P-201ENST00000444706 1521 ntBASIC20.97■□□□□ 0.95
SKA1Q96BD8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
SKA1Q96BD8 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SKA1Q96BD8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 AC068338.2-201ENST00000563278 1430 ntBASIC20.96■□□□□ 0.95
SKA1Q96BD8 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 CYP2T1P-201ENST00000432607 1285 ntBASIC20.96■□□□□ 0.95
SKA1Q96BD8 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 AC007952.6-201ENST00000573168 2673 ntBASIC20.96■□□□□ 0.95
SKA1Q96BD8 AC003957.1-201ENST00000625108 2673 ntBASIC20.96■□□□□ 0.95
SKA1Q96BD8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SKA1Q96BD8 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SKA1Q96BD8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 AL512625.2-201ENST00000417533 625 ntBASIC20.95■□□□□ 0.94
SKA1Q96BD8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SKA1Q96BD8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.95■□□□□ 0.94
SKA1Q96BD8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
SKA1Q96BD8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SKA1Q96BD8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.95■□□□□ 0.94
SKA1Q96BD8 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SKA1Q96BD8 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.95■□□□□ 0.94
SKA1Q96BD8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.94■□□□□ 0.94
SKA1Q96BD8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms