Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
RTF1Q92541 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
RTF1Q92541 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
RTF1Q92541 ESRRAP1-201ENST00000400596 1257 ntBASIC26.84■■□□□ 1.89
RTF1Q92541 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC26.84■■□□□ 1.89
RTF1Q92541 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC26.84■■□□□ 1.89
RTF1Q92541 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.84■■□□□ 1.89
RTF1Q92541 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.84■■□□□ 1.89
RTF1Q92541 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC26.84■■□□□ 1.89
RTF1Q92541 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
RTF1Q92541 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
RTF1Q92541 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
RTF1Q92541 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC26.83■■□□□ 1.89
RTF1Q92541 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
RTF1Q92541 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
RTF1Q92541 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
RTF1Q92541 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
RTF1Q92541 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC26.83■■□□□ 1.89
RTF1Q92541 HLA-B-256ENST00000639848 1089 ntBASIC26.83■■□□□ 1.89
RTF1Q92541 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
RTF1Q92541 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC26.83■■□□□ 1.89
RTF1Q92541 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
RTF1Q92541 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC26.83■■□□□ 1.89
RTF1Q92541 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC26.83■■□□□ 1.89
RTF1Q92541 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
RTF1Q92541 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
RTF1Q92541 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
RTF1Q92541 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.88
RTF1Q92541 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.88
RTF1Q92541 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
RTF1Q92541 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC26.82■■□□□ 1.88
RTF1Q92541 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
RTF1Q92541 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.82■■□□□ 1.88
RTF1Q92541 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
RTF1Q92541 MFF-205ENST00000354503 1085 ntTSL 2 BASIC26.82■■□□□ 1.88
RTF1Q92541 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC26.82■■□□□ 1.88
RTF1Q92541 UNC93B5-201ENST00000530315 699 ntBASIC26.82■■□□□ 1.88
RTF1Q92541 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC26.82■■□□□ 1.88
RTF1Q92541 AC060766.5-201ENST00000590539 871 ntBASIC26.82■■□□□ 1.88
RTF1Q92541 ITM2C-210ENST00000620962 501 ntBASIC26.82■■□□□ 1.88
RTF1Q92541 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
RTF1Q92541 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
RTF1Q92541 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RTF1Q92541 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RTF1Q92541 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC26.81■■□□□ 1.88
RTF1Q92541 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
RTF1Q92541 KRT18P29-201ENST00000397031 1267 ntBASIC26.81■■□□□ 1.88
RTF1Q92541 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC26.81■■□□□ 1.88
RTF1Q92541 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RTF1Q92541 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RTF1Q92541 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC26.81■■□□□ 1.88
RTF1Q92541 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC26.81■■□□□ 1.88
RTF1Q92541 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
RTF1Q92541 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.8■■□□□ 1.88
RTF1Q92541 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
RTF1Q92541 AL049796.1-201ENST00000565336 1766 ntBASIC26.8■■□□□ 1.88
RTF1Q92541 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
RTF1Q92541 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 MMAB-206ENST00000540016 945 ntTSL 3 BASIC26.8■■□□□ 1.88
RTF1Q92541 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.8■■□□□ 1.88
RTF1Q92541 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
RTF1Q92541 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.8■■□□□ 1.88
RTF1Q92541 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
RTF1Q92541 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
RTF1Q92541 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.79■■□□□ 1.88
RTF1Q92541 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC26.79■■□□□ 1.88
RTF1Q92541 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.79■■□□□ 1.88
RTF1Q92541 AL356652.1-201ENST00000615962 565 ntBASIC26.79■■□□□ 1.88
RTF1Q92541 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
RTF1Q92541 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
RTF1Q92541 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC26.79■■□□□ 1.88
RTF1Q92541 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.79■■□□□ 1.88
RTF1Q92541 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.78■■□□□ 1.88
RTF1Q92541 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 C2orf69P4-201ENST00000565394 541 ntBASIC26.78■■□□□ 1.88
RTF1Q92541 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC26.78■■□□□ 1.88
RTF1Q92541 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
RTF1Q92541 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
RTF1Q92541 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
RTF1Q92541 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
RTF1Q92541 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.77■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms