Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCNFP41002 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.61■□□□□ 0.89
CCNFP41002 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCNFP41002 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.61■□□□□ 0.89
CCNFP41002 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.61■□□□□ 0.89
CCNFP41002 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.61■□□□□ 0.89
CCNFP41002 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.61■□□□□ 0.89
CCNFP41002 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L2-201ENST00000561772 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.61■□□□□ 0.89
CCNFP41002 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.61■□□□□ 0.89
CCNFP41002 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 AC087623.3-201ENST00000607047 1098 ntBASIC20.61■□□□□ 0.89
CCNFP41002 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L6-201ENST00000626483 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L1-201ENST00000627662 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L8-201ENST00000629013 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L3-201ENST00000630187 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L7-201ENST00000630678 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 DUX4L5-201ENST00000630834 1275 ntBASIC20.61■□□□□ 0.89
CCNFP41002 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCNFP41002 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCNFP41002 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CCNFP41002 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.61■□□□□ 0.89
CCNFP41002 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCNFP41002 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCNFP41002 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CCNFP41002 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCNFP41002 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.6■□□□□ 0.89
CCNFP41002 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.6■□□□□ 0.89
CCNFP41002 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.6■□□□□ 0.89
CCNFP41002 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCNFP41002 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCNFP41002 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.6■□□□□ 0.89
CCNFP41002 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCNFP41002 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCNFP41002 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCNFP41002 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.6■□□□□ 0.89
CCNFP41002 AC011484.1-201ENST00000377652 1995 ntBASIC20.59■□□□□ 0.89
CCNFP41002 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.59■□□□□ 0.89
CCNFP41002 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCNFP41002 AC099778.1-201ENST00000568593 1911 ntBASIC20.59■□□□□ 0.89
CCNFP41002 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.59■□□□□ 0.89
CCNFP41002 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.59■□□□□ 0.89
CCNFP41002 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCNFP41002 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.59■□□□□ 0.89
CCNFP41002 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.58■□□□□ 0.89
CCNFP41002 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCNFP41002 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCNFP41002 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.58■□□□□ 0.89
CCNFP41002 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.58■□□□□ 0.89
CCNFP41002 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.58■□□□□ 0.89
CCNFP41002 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.58■□□□□ 0.89
CCNFP41002 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.58■□□□□ 0.89
CCNFP41002 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.58■□□□□ 0.89
CCNFP41002 MIR5787-201ENST00000611784 55 ntBASIC20.58■□□□□ 0.89
CCNFP41002 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCNFP41002 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.58■□□□□ 0.88
CCNFP41002 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCNFP41002 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CCNFP41002 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.58■□□□□ 0.88
CCNFP41002 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.57■□□□□ 0.88
CCNFP41002 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCNFP41002 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
CCNFP41002 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.57■□□□□ 0.88
CCNFP41002 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.57■□□□□ 0.88
CCNFP41002 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.57■□□□□ 0.88
CCNFP41002 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.57■□□□□ 0.88
CCNFP41002 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCNFP41002 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCNFP41002 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.56■□□□□ 0.88
CCNFP41002 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms