Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
MSX2P35548 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
MSX2P35548 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
MSX2P35548 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 SRD5A1P1-201ENST00000442297 786 ntBASIC19.55■□□□□ 0.72
MSX2P35548 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.55■□□□□ 0.72
MSX2P35548 SMUG1P1-201ENST00000590640 811 ntBASIC19.55■□□□□ 0.72
MSX2P35548 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
MSX2P35548 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
MSX2P35548 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.54■□□□□ 0.72
MSX2P35548 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
MSX2P35548 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
MSX2P35548 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.54■□□□□ 0.72
MSX2P35548 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.54■□□□□ 0.72
MSX2P35548 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSX2P35548 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.54■□□□□ 0.72
MSX2P35548 AP000974.1-201ENST00000623909 2387 ntBASIC19.54■□□□□ 0.72
MSX2P35548 AL356740.2-201ENST00000601559 647 ntBASIC19.54■□□□□ 0.72
MSX2P35548 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.54■□□□□ 0.72
MSX2P35548 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.54■□□□□ 0.72
MSX2P35548 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
MSX2P35548 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSX2P35548 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSX2P35548 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSX2P35548 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
MSX2P35548 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.53■□□□□ 0.72
MSX2P35548 SYT6-210ENST00000641643 1587 ntBASIC19.53■□□□□ 0.72
MSX2P35548 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.53■□□□□ 0.72
MSX2P35548 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.53■□□□□ 0.72
MSX2P35548 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 SERBP1P1-201ENST00000396021 1160 ntBASIC19.53■□□□□ 0.72
MSX2P35548 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.53■□□□□ 0.72
MSX2P35548 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.53■□□□□ 0.72
MSX2P35548 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.53■□□□□ 0.72
MSX2P35548 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MSX2P35548 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
MSX2P35548 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
MSX2P35548 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.53■□□□□ 0.72
MSX2P35548 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.53■□□□□ 0.72
MSX2P35548 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
MSX2P35548 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.52■□□□□ 0.72
MSX2P35548 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.52■□□□□ 0.72
MSX2P35548 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.52■□□□□ 0.72
MSX2P35548 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.52■□□□□ 0.72
MSX2P35548 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.52■□□□□ 0.72
MSX2P35548 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
MSX2P35548 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
MSX2P35548 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
MSX2P35548 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
MSX2P35548 AC004408.2-201ENST00000623613 2777 ntBASIC19.51■□□□□ 0.71
MSX2P35548 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
MSX2P35548 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.51■□□□□ 0.71
MSX2P35548 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.51■□□□□ 0.71
MSX2P35548 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
MSX2P35548 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
MSX2P35548 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.51■□□□□ 0.71
MSX2P35548 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
MSX2P35548 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 AC011484.1-201ENST00000377652 1995 ntBASIC19.5■□□□□ 0.71
MSX2P35548 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
MSX2P35548 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms