Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
COL8A1P27658 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.96■□□□□ 0.47
COL8A1P27658 AC245052.3-201ENST00000450182 901 ntBASIC17.96■□□□□ 0.47
COL8A1P27658 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.96■□□□□ 0.47
COL8A1P27658 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.96■□□□□ 0.47
COL8A1P27658 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.96■□□□□ 0.47
COL8A1P27658 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
COL8A1P27658 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.96■□□□□ 0.47
COL8A1P27658 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL8A1P27658 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
COL8A1P27658 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL8A1P27658 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
COL8A1P27658 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL8A1P27658 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.95■□□□□ 0.46
COL8A1P27658 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.95■□□□□ 0.46
COL8A1P27658 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.95■□□□□ 0.46
COL8A1P27658 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.95■□□□□ 0.46
COL8A1P27658 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL8A1P27658 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
COL8A1P27658 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL8A1P27658 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL8A1P27658 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL8A1P27658 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 AC113347.1-201ENST00000413321 391 ntBASIC17.94■□□□□ 0.46
COL8A1P27658 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.94■□□□□ 0.46
COL8A1P27658 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.94■□□□□ 0.46
COL8A1P27658 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL8A1P27658 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.94■□□□□ 0.46
COL8A1P27658 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.94■□□□□ 0.46
COL8A1P27658 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL8A1P27658 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.93■□□□□ 0.46
COL8A1P27658 AL137013.1-201ENST00000432946 1228 ntBASIC17.93■□□□□ 0.46
COL8A1P27658 AC104076.2-201ENST00000448912 469 ntBASIC17.93■□□□□ 0.46
COL8A1P27658 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 DUX4L26-201ENST00000489078 1255 ntBASIC17.93■□□□□ 0.46
COL8A1P27658 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL8A1P27658 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.93■□□□□ 0.46
COL8A1P27658 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL8A1P27658 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.93■□□□□ 0.46
COL8A1P27658 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms