Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MT-ND1P03886 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
MT-ND1P03886 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.31■□□□□ 0.68
MT-ND1P03886 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.31■□□□□ 0.68
MT-ND1P03886 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.31■□□□□ 0.68
MT-ND1P03886 SMUG1P1-201ENST00000590640 811 ntBASIC19.31■□□□□ 0.68
MT-ND1P03886 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.31■□□□□ 0.68
MT-ND1P03886 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MT-ND1P03886 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
MT-ND1P03886 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
MT-ND1P03886 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.3■□□□□ 0.68
MT-ND1P03886 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
MT-ND1P03886 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.3■□□□□ 0.68
MT-ND1P03886 AC126544.1-201ENST00000580842 1059 ntBASIC19.3■□□□□ 0.68
MT-ND1P03886 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.3■□□□□ 0.68
MT-ND1P03886 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
MT-ND1P03886 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.3■□□□□ 0.68
MT-ND1P03886 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.3■□□□□ 0.68
MT-ND1P03886 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
MT-ND1P03886 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
MT-ND1P03886 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
MT-ND1P03886 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
MT-ND1P03886 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
MT-ND1P03886 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.29■□□□□ 0.68
MT-ND1P03886 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.29■□□□□ 0.68
MT-ND1P03886 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.29■□□□□ 0.68
MT-ND1P03886 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.29■□□□□ 0.68
MT-ND1P03886 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.29■□□□□ 0.68
MT-ND1P03886 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.29■□□□□ 0.68
MT-ND1P03886 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 AC008406.3-201ENST00000620001 1374 ntBASIC19.29■□□□□ 0.68
MT-ND1P03886 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MT-ND1P03886 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MT-ND1P03886 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
MT-ND1P03886 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MT-ND1P03886 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
MT-ND1P03886 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.28■□□□□ 0.68
MT-ND1P03886 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.28■□□□□ 0.68
MT-ND1P03886 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.28■□□□□ 0.68
MT-ND1P03886 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.28■□□□□ 0.68
MT-ND1P03886 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
MT-ND1P03886 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
MT-ND1P03886 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
MT-ND1P03886 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.28■□□□□ 0.68
MT-ND1P03886 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.28■□□□□ 0.68
MT-ND1P03886 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
MT-ND1P03886 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.28■□□□□ 0.68
MT-ND1P03886 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MT-ND1P03886 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MT-ND1P03886 AC116562.4-201ENST00000641316 2276 ntBASIC19.27■□□□□ 0.68
MT-ND1P03886 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.27■□□□□ 0.68
MT-ND1P03886 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
MT-ND1P03886 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MT-ND1P03886 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MT-ND1P03886 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MT-ND1P03886 BX005040.4-201ENST00000637145 1518 ntBASIC19.27■□□□□ 0.68
MT-ND1P03886 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.27■□□□□ 0.68
MT-ND1P03886 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
MT-ND1P03886 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
MT-ND1P03886 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MT-ND1P03886 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.27■□□□□ 0.68
MT-ND1P03886 IGHV3-19-201ENST00000521488 291 ntBASIC19.27■□□□□ 0.68
MT-ND1P03886 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.27■□□□□ 0.67
MT-ND1P03886 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.27■□□□□ 0.67
MT-ND1P03886 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.27■□□□□ 0.67
MT-ND1P03886 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
MT-ND1P03886 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MT-ND1P03886 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MT-ND1P03886 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms