Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.23■□□□□ 0.83
SNX3O60493 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX3O60493 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SNX3O60493 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SNX3O60493 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
SNX3O60493 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.22■□□□□ 0.83
SNX3O60493 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
SNX3O60493 AC093503.3-201ENST00000624917 2352 ntBASIC20.22■□□□□ 0.83
SNX3O60493 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX3O60493 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.22■□□□□ 0.83
SNX3O60493 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SNX3O60493 KRT8P33-201ENST00000508125 1423 ntBASIC20.21■□□□□ 0.83
SNX3O60493 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SNX3O60493 AC010525.1-201ENST00000585559 441 ntBASIC20.21■□□□□ 0.83
SNX3O60493 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.21■□□□□ 0.83
SNX3O60493 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.21■□□□□ 0.83
SNX3O60493 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.21■□□□□ 0.83
SNX3O60493 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SNX3O60493 AC093484.2-201ENST00000580996 2166 ntBASIC20.21■□□□□ 0.83
SNX3O60493 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SNX3O60493 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.2■□□□□ 0.82
SNX3O60493 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SNX3O60493 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SNX3O60493 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SNX3O60493 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SNX3O60493 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SNX3O60493 ABHD17AP5-201ENST00000580133 923 ntBASIC20.2■□□□□ 0.82
SNX3O60493 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SNX3O60493 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SNX3O60493 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SNX3O60493 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.2■□□□□ 0.82
SNX3O60493 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
SNX3O60493 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.19■□□□□ 0.82
SNX3O60493 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.19■□□□□ 0.82
SNX3O60493 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.19■□□□□ 0.82
SNX3O60493 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.19■□□□□ 0.82
SNX3O60493 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.19■□□□□ 0.82
SNX3O60493 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.19■□□□□ 0.82
SNX3O60493 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SNX3O60493 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SNX3O60493 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SNX3O60493 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SNX3O60493 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.18■□□□□ 0.82
SNX3O60493 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SNX3O60493 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SNX3O60493 MIR3181-201ENST00000578512 73 ntBASIC20.18■□□□□ 0.82
SNX3O60493 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.18■□□□□ 0.82
SNX3O60493 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SNX3O60493 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.18■□□□□ 0.82
SNX3O60493 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
SNX3O60493 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.17■□□□□ 0.82
SNX3O60493 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.17■□□□□ 0.82
SNX3O60493 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 HSD17B1P1-201ENST00000590052 955 ntBASIC20.17■□□□□ 0.82
SNX3O60493 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SNX3O60493 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.17■□□□□ 0.82
SNX3O60493 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.17■□□□□ 0.82
SNX3O60493 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms